Gene detail

Detailed information of gene02880.t2 in Actinoscyphia liui

Genomic Location: chr1:43788661...43797567
NR annotation: XP_020916164.1, PWWP domain-containing DNA repair factor 3A [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene02880.t2

ATGGAGAAAGGATTTTCTTTGCATGATGTGGTTCTTGAAATTACATCTACAAAAAGATCCAAAAAGAAGGTTGCTTCTGTAAGGTTCCTGGGTGAAAATACATATGAGGACATTAAAAACCCTAATGACATCAAGAAGTGGGATTGTGACGACCAATATACATATATTCAACAAGGAAGAAGGTCATTAAAGGATCCAAATATGAAGATATTATTTAATAAAGGAATAAAAGAAGCTAAAGATCTCACTGATAATCCTGCCAAAGAAAGATCAACCAAGTCTCCTGCAAAGAAGGCACAGCACAATTCAAGTGCAACTGTAGAAGCTGAGATCTGTGGAGTTTCTAAAGTAAAAAAGAAAAAGAACACCTCAAAGGAGATAATGTTTATTGATGATAACAATATTGCAAGTAATGTCAATGAAGAAGGTTATTCTGCCCAAAACAATGTTGAAAGCCAAGTATCTCAATCCAATAAAGTATACAATGAGAAACAAACTACTGGTCCACGCAAGACTAGTCCACAAAAAGGGTGCATAGATGGTGAAGGGAATTCTAGTAAAGTCCATGTGAGTCAATCGGCAACTTGTTTGGACAGTAAAGAAGCTGATGTTCATTCAAGGAAAAGTAAAACCACTAAACTAATTGGAACTAAGTCAAAATTACCAAGGAGTAATTCTATGGATTCAAATCGTAATAGAGAAAGAACAAGCAAGAGGATTGCCTCCAGTGTTAGGAGTCCAATTAGGAAAAGGCGAAGAAAATCAGCCGATAATATAAATGTTACAGAATCTGTCGCAGATGTAATCAAAGATGTTAAACCCAGTAGGAAAAGAAAGGTTGAAGATATCGATGGGTTAAAATCAAAATGTAAAGAGAATGGTTTATCGTCACCTTGTGAAAAATTGCGACAAGACACTGAAGCCGCCAACCATTCCAATGTTAAAACAAATAAGAAATTGAAAAACTTTACCAAAGAATTAGGTCAAAAAGAGAGCGCATCATCTGTCTGTGGTAATGCAAACCAAATAACAAACAATAATAGCAAGGTCACTAGTGTAAATAATGTAAATAATACTTGTAATAATTCAGCTGATGGATGGGATTCAGATGAGAGTTCTGATAGAGAATTAATGGCAACTGCACTGTCACCCAGTCCTACTGACATGAAATTTGAACTAAATGATGTTGTCTGGGCAAAGATGAACAGAGATCCATACTGGCCTGGTCAGGTCACAAGGATACTGAAAAAACCTAAGAAGATCTATGTCAAATTTCTTGGGTCTGTTGCGAAAAGAAGTTTTTCTTGTAAGAGAATACTTCCTTTTGCCTGTGACACTGAGAAACGAGAAGAGTTGATGAAAGAAGCATCAAGTCATGATGCATCTTATTTCCAGAATGCTTTTACTGAAGCTGAGGATCTTGTAAGAAAAAAAGCCCTTGGCATTCCCATTGAACCAGAGGAAGATGAAGATTATGAGCAGGTTGATAATGATGAAGTGATGGTTGATAACGAGGAAAACAAAGAGGAAAAAGTTGCTCCTTCAATACAAATTCCTGATGAACCAACAGATGCGAGAAGATCAACAAGAACAAAAAAGCAAACTTCAAAATATAATCATGGCATGTTGTCTTATATCAGAGAATCAAAGCCTATCCTAAAAGAAATACTAGAGGAAAAGAGGCCATCTGAAAGGCATCAAGTCTTCACATCAGGAAGTGTAAAAGAGAAGAATGCATTAAAATGCAAATCTGGATTTGGTCCAATATCAGACTCAGATTTAGAAGATGATATTATGGAGATGTTACGAGACTTCTATAATGAAGTAACAAACTATAAACAGGACATGTCACAAGTAACATACATTGCAGATGTGTGGTTACCTGAAGCCATGATATATGCTCTTCAGAAAATTGATAATGTCGACCGAATGAGAGCTGAAGACATATACCAAAAAGGAACCAGCCATGTTTCAAATAACAGCCACAGAGAATTGGTTGAGCAGCTCAAAGGCAAAACCCTTACTGATGAAGATAGAAATGCCTCTATTGAACGAGCAAAAAGGCTATGA

Transcript

gene02880.t2

CAAGATTCGAGAATTTGTCACATCTTGTAGATTTCGTCTTTTAAATGCAAAATCATCTCTTTCTTTAAGAAGATTTCGGATGGAGAAAGGATTTTCTTTGCATGATGTGGTTCTTGAAATTACATCTACAAAAAGATCCAAAAAGAAGGTTGCTTCTGTAAGGTTCCTGGGTGAAAATACATATGAGGACATTAAAAACCCTAATGACATCAAGAAGTGGGATTGTGACGACCAATATACATATATTCAACAAGGAAGAAGGTCATTAAAGGATCCAAATATGAAGATATTATTTAATAAAGGAATAAAAGAAGCTAAAGATCTCACTGATAATCCTGCCAAAGAAAGATCAACCAAGTCTCCTGCAAAGAAGGCACAGCACAATTCAAGTGCAACTGTAGAAGCTGAGATCTGTGGAGTTTCTAAAGTAAAAAAGAAAAAGAACACCTCAAAGGAGATAATGTTTATTGATGATAACAATATTGCAAGTAATGTCAATGAAGAAGGTTATTCTGCCCAAAACAATGTTGAAAGCCAAGTATCTCAATCCAATAAAGTATACAATGAGAAACAAACTACTGGTCCACGCAAGACTAGTCCACAAAAAGGGTGCATAGATGGTGAAGGGAATTCTAGTAAAGTCCATGTGAGTCAATCGGCAACTTGTTTGGACAGTAAAGAAGCTGATGTTCATTCAAGGAAAAGTAAAACCACTAAACTAATTGGAACTAAGTCAAAATTACCAAGGAGTAATTCTATGGATTCAAATCGTAATAGAGAAAGAACAAGCAAGAGGATTGCCTCCAGTGTTAGGAGTCCAATTAGGAAAAGGCGAAGAAAATCAGCCGATAATATAAATGTTACAGAATCTGTCGCAGATGTAATCAAAGATGTTAAACCCAGTAGGAAAAGAAAGGTTGAAGATATCGATGGGTTAAAATCAAAATGTAAAGAGAATGGTTTATCGTCACCTTGTGAAAAATTGCGACAAGACACTGAAGCCGCCAACCATTCCAATGTTAAAACAAATAAGAAATTGAAAAACTTTACCAAAGAATTAGGTCAAAAAGAGAGCGCATCATCTGTCTGTGGTAATGCAAACCAAATAACAAACAATAATAGCAAGGTCACTAGTGTAAATAATGTAAATAATACTTGTAATAATTCAGCTGATGGATGGGATTCAGATGAGAGTTCTGATAGAGAATTAATGGCAACTGCACTGTCACCCAGTCCTACTGACATGAAATTTGAACTAAATGATGTTGTCTGGGCAAAGATGAACAGAGATCCATACTGGCCTGGTCAGGTCACAAGGATACTGAAAAAACCTAAGAAGATCTATGTCAAATTTCTTGGGTCTGTTGCGAAAAGAAGTTTTTCTTGTAAGAGAATACTTCCTTTTGCCTGTGACACTGAGAAACGAGAAGAGTTGATGAAAGAAGCATCAAGTCATGATGCATCTTATTTCCAGAATGCTTTTACTGAAGCTGAGGATCTTGTAAGAAAAAAAGCCCTTGGCATTCCCATTGAACCAGAGGAAGATGAAGATTATGAGCAGGTTGATAATGATGAAGTGATGGTTGATAACGAGGAAAACAAAGAGGAAAAAGTTGCTCCTTCAATACAAATTCCTGATGAACCAACAGATGCGAGAAGATCAACAAGAACAAAAAAGCAAACTTCAAAATATAATCATGGCATGTTGTCTTATATCAGAGAATCAAAGCCTATCCTAAAAGAAATACTAGAGGAAAAGAGGCCATCTGAAAGGCATCAAGTCTTCACATCAGGAAGTGTAAAAGAGAAGAATGCATTAAAATGCAAATCTGGATTTGGTCCAATATCAGACTCAGATTTAGAAGATGATATTATGGAGATGTTACGAGACTTCTATAATGAAGTAACAAACTATAAACAGGACATGTCACAAGTAACATACATTGCAGATGTGTGGTTACCTGAAGCCATGATATATGCTCTTCAGAAAATTGATAATGTCGACCGAATGAGAGCTGAAGACATATACCAAAAAGGAACCAGCCATGTTTCAAATAACAGCCACAGAGAATTGGTTGAGCAGCTCAAAGGCAAAACCCTTACTGATGAAGATAGAAATGCCTCTATTGAACGAGCAAAAAGGCTATGATTATTTAGGGCTGCTTATACTGTAGTAAGCTGTTGTGAATAACAAAATGTAAATAAGTTAACTACTCTGTTTATCAGGAAGTGGTGAATTTTTTATTGTGAATACAACATTACTAGTAGAGAATATTATTGCACTTTCTTTGTCCTTTAGGGCTGGGTGTGCATCAAATAAAATATATAAAAATTACTCTTTTCTTTACTTCTCATCTCTTTATCCACCCCTCCCCTCAATCCTTCCTTTCTTCTTCCTTCCTAATTCTTCCTTTCTTTTTCCTTCCTTCCTTTTTTTCTTTCTTTCTTCCTTTCATTTCATTTTTTATTTTGTTTCATCTTTTTCATTTGTGATTATTCTTTTTTTTCTTCCATCCTTTCTTTCCTTTTCATCTTTCATTCATTTTCTTTCCCATGTTCAACCGTGAAATTATGTAATTTTCTATAGTTCATGCCAATCCTGAAATTATGTGATTATAGTACTATTTATATAGAGCATAGTGAAGTAATGGTTTTTTACAATAAATATGTCAATA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00855	PWWP	PWWP domain	Domain	Interproscan
PF20886	PWP3A-B_C	PWWP domain-containing DNA repair factor 3A/B, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035504	Domain	MUM1-like, PWWP domain	Interproscan
IPR000313	Domain	PWWP domain	Interproscan
IPR048795	Domain	PWWP domain-containing DNA repair factor 3A/3B/4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23386	PWWP3, MUM1; PWWP domain-containing DNA repair factor 3	-	DNA repair and recombination proteins	ko03400	deepkoala