Gene detail

Detailed information of gene02755.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene02755.t1	SCAVENGER RECEPTOR DOMAIN-CONTAINING	chr1	41825469	41844641	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene02755.t1

ATGACTTCCAAATCAACGCAACGAATGGTATCGTTAGTCATTTCTGTTTACTGTATCGTATACTTCAACGCTAGAGCAGTTGGTTCGGTGGATTTGAGCTCCAGTATCTGGACAGAAAGCAAGTGTCCTGAGGGAACTTTTAAGAAGGATCTCTACTGCCTTTTAAATTGTGGACCCGGTCTTTATGGAAACATCGCGACAAGGACCTGTCTAGCGTGCTCCAAGGCCTGTAGAACGTGCCGGAATGGCGTCCTTAATGACCAATGTTCCAGTTGTTACGATCCGTACTATTTATATAGGAACACTTGTCGTAAAGGTTGCGGCGAGTTATTCAAACAAGGACCTCCCTCATCAAAAATAAGGTTAATATCCGATGGGAGTCATTTTCAGGGACGCTTAGAGGTGTTGCGAGAGAAAACTTGGGGGACCATATGTGACGATGGCTGGGACATCAACGATGCCCAAGTTGTATGTCGGGAGTTGATGCTGGGTGACGCCCTTGCCGCGGTGACGATGGGGAGACTGGGCACTGGTTCTGACGATCAACCTATTTGGCTTTCTAAACTGCAATGCACTGGGAACGAATCAAGAATTGATATCTGTGGACACAAACCGTGGGGTACGCACAGTTGTGGTCATTTTGAAGATGCTGGCGTCATCTGCTCGGGCCCAGACTCCACGCGTCGTTGTGTGACTGAGTGTGGCCCTGGTTACTACAAAGTGCCCAAAAGTGCGAGCTGTGGTGTATGTGCGCCGGAATGTTTGGCATGTGCCAACACATCTACTTCGTGTATGGGCTGCGGCGGGACAACTTTTCTCAAAGGAAATAAATGTGTTCGTGAGTGCGGTGAAGGATACTTTGGCAACCCCGATGGGCGTGTATGCCAGAAATGTGATCCCTCCTGCCGAATTTGTTCAGGTAACGCAAAGAAATGCACCGGATGCGAAGACGATAGGTTTCTGTCCAACACGACTTGCGTAAAGAAGTGTAGCGTCGTAGAAGTCGCCCAGCAACGTTTGATTCGCTTGAGTGGAACGGGACGCTCTTCTCCGTACGAAGGGCGAGTGGAAGTGTATCGTGACGGTGAATGGAACACAGTGTGCGATGATTACTGGGACTTTAGAGAAGCCACTGTAGTGTGCCGTCAGTTGAGGATGGGACGTGCCATAAAGTCGTCTAGCAGAGGAAAATTCGGACCAGGATCCGGGCGTATTTGGTTTGACAAACTCGCTTGTACAGGCTCAGAGAAAAGTATATTTGATTGCCCTTACGGAAAAGTGGTTTGGAACTCGCGGTGCTACCACATCAAAGACTCGGGCGTTGTCTGCTCAGGACCTCAGTCTGGAAACCCGCTGACCAACATGTGTGTGAAGGAGTGTCGAGAAGGTTTTTACAAGGATCGCAATGATCTCTGTAAGCCCTGTAACGTGGCACGATGTGCTGCATGTATTGGGTTTTCCTTCCGCTGTACAAAGTGCAAAGCACCCAAATTTTTGAAAGAGAACAACTGTGTATCTGACTGCGGTAGTTCTAGCTACGGACATTTACTCAGCGGCACTTGTAAAACTTGCGATAAAAAGTGCGTGAGCTGCGCTAATGGGAACGACGGCACCAACTGTACCTCATGCAGCGCTCCTCTGACACTCAAAGATGGCAAATGTACGGGAAGCTGCAGGCCTGATCTGTACCAGCACATGGGTAAGTGTATTAAAGACTGTCCCATAGGATACTACAGCTTGTCATTTAACTTTACCTGCCTCAAGTGCCCTAAAGAGTGCTTCAGCTGTGTTTACGATCAAAGCAAAAACGCCCCCAAGTGCATCTTGTGCAAACCACCTCTCGTGTCCAACAATGGCGCTTGTACTCCAAACTGTTCGGTCTCGGGGAAGGTTTCATTCCCTGTAGCCAACGCCACTGGTTCTGTGACGATCAGACTCGTAAACGGATCCGATTATTTGGAAGGTCTCTTGCAAGTGTTCCATAATGGAGAATGGGGGACCATTTGTGATGACGGCTGGGATTATTTGGAATCTAAAGTACTATGCAAGCAGCTCAATCTCGGTGTCCAGTCCTCTAAACCGATTGGAAACATTCCTAAGGGCACTGGTCGAATCTGGCTGGATGAAATGTTCTGCACAGGCCGTGAGAAATCCCTAGAAGATTGTGTGCATAAACCATGGGGAGAAAACAACTGCAACCACGAGGAAGATGTAATTGTGCGGTGTTCGGGTCCCGGAGTGCGCAAGTGCCAAGATAAATGCCCCGATAGTTACTACGCAACCAGTGGCGAATGCAAAAGGTGTGACGCATCTTGTGCCACGTGTGTTGGAAACTCGACTAATTGTATCAAGTGCACTTCCGGTTACTATAAGAACGGAAGTACTTGCGTGACAAGTTGCGGCGATGGCTTCTTCTTGGAGCCGACCACGATGGAATGTCAGTCATGCAATAAGACGTGCGCCACGTGTGTTGGTAACGCCATGAACTGTACGTCGTGTGCAAAGCCGTTGTATCGTAAGGGCTCGCAGTGCTTACCATCTTGTGATCCCTGGTACGAACCTGCTGTTACCCATGGCATTAGACTAGCTGGTACCAAAAGAAGAGACAATCTGGAGGGACGTGTTGAGCTGTATTACAATGGCGTGTGGGGAACAGTCTGCGATGACGGATGGGACATACGAGAAGCTACGGTCGCATGTCGTATGCTGAACCTTGGTAACGCTTCAGAAGCCATAACGACAGCTAGATTTGGTGCGGGCAAAGGAACGATATTACTCGATGACGTGAACTGCTTAGGCAATGAAAACTCGTTAGGAAAGTGCACTCACAGGGGGTGGGGAGTGGAGAACTGTGAACACAGTGAAGACGCTGGGGTGAGGTGTTCAGGTCCTGACCGATCACGTGACTGCATAGAACACTGTACAAATGGCTATTTCAAAAACAGTACAACTAGAACCTGTGGCAAGTGCAGTCCAGATTGCAAAACCTGCATGGATTTCCCCGACAACTGTATGTCTTGCGAATTCTACGAGTTCCTGAATATATCGTCGGTCAGAAATATTTGTGTACAAGATTGTGGCGACGGTTCCTACGCAGATAATTCCACGCGAGAGTGCAAGCCGTGCAGCCCGAACTGCACTGGCTGCTTTGGAGATCCGACCAATTGTACATCGTGCAGCTTTGGCAAATTCCTTGACACAGAAACCAACATTTGTGTTAGTAGCTGTAAAGACAAGACCTTGATCAATGGCGTCAACGACATTCGTCTTGCTGGTACCAATAAAACAACGTTTGGACGTCTAGAGGTCAAGTATAAAGGCAAATGGGGGACGGTATGCGATGATAGTTTTGATCAAAAGGACCGTGATGTGGCGTGCAGACAGCTCAAGCTTGGCAAGGGTGTTGGTATCAAGAGTAGTGCTTATTATGGACAGGGAACTGGGAAGATAATGCTAGACGACTTGCAGTGTCGAGGGACAGAGAGATCGCTTTTCGACTGTAGGATGAACTCTGGTGGTATTGGACATGGAAATTGTGGTCACGGCGAGGATGTCGGCATCATCTGTTCGGGTCCCGACACGTCTCATCGATGTGTCCGAAGTTGTCCGGCCGGCTTTTTCAAAGTCAAGGACAAAGGCAAAGATGTCTGTAAAAAGTGTTCATCAAGCTGCCAGGCATGTATTGGTAAACAAGATAATTGCAACAAGTGCTCGCCACCTCTATTTCTTGAGGGAACTAAATGTGTTAGAAAGTGTACTTTGGGACGATATGGCAACACCATTTCCAGAAAATGTCTTCCTTGTAATTTGAACTGTCAGACTTGCCTGGATGGAGTCAGTGACAATCTTTGTAAGACCTGTGCGAAAGGACTGGTACTTAACGGAACTCTGTGCACTAAAGAGTGTGGCAGTATGCGTTCGGTCGAAGAATTACTTCCGCCCCGTCCAGCTAAGCCCTCGGTACGTTTGGTCGGCGGTAAAACTAAACAAGAAGGTCGCGTTGAAGTTCTGCATGAGGAAACCTGGGGAACAGTGTGTGATGATCAATGGGATCTCAACGACGCTCATGTTGTTTGTAGAGAGCTTGGTTTTGGTAAAGCTCTGAAAGCACCACTCCATGCGGAATTTGGAAAAGGAAAAGGCATCATTTGGATAGACAATGTCGACTGCTATGGCTACGAAAGCTCCATTACCCAATGCCGAAACCATGGCTGGGGAATTAACAACTGTAATTCAGATCACGGTGAAGACGCTAGTGTCGTCTGTGATAACACTACCATTGAAGATGTAGCGAACAACTACTGTAGAGAAGTTCTACAACAAAGCTGCAGCAACGATAAGCCATGTTTCAGTGGCGTGACGTGTGTGAATTTAGGTCTTCTCACCAATACAGGAAAGACGGAATCGGTGTGCTTGCAGTGCCCTGATAAATATGTCGGCGATGGAAGAATTTGTAGAGGCTGTAGTTGTTGCTTTAGTTTTTGTAAAAGTGTTGGTTGTGATGATGGTAGTTGTGGGCGTGATGATGTTGATGATGATGGTTGTGGTGGTAGTGGTGCTGGTGGTAGTAGTGTAGTAGTGACAGTGATGGTGGTGGAGAAGGTTGGTCCTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTAGTAGTGGTGGTAGTAGTGGTGGTATTAGTGGTGGTGGTGGTAGTAGTGGTGGTGGTGGTAGTGGTGGTGGTGGTAGTAGTGGTGGTGGTGGTTGTAGTAGTGGTGGTGGTGGTGGTGATACTGGTGCTGGTGGTGGTGGTGATAGTGGTGGTGGTGGTGCTGGTGGTAGTAGTGGTGGTGCTGGTGGTAGTAGTGGTGGTGCTGGTGGTAGTAGTGGTGGTGGTGGTGGTGATACTGGTGCTGGTGGTGGTGAATGTGATGGTGTTGTATCGTCCACGAAACCCGAGTTTGCCTCTGAAATGCCTTCAAATATAACATTCATAGCAGGCAACGTTATTCGTATAGGCTGTTCAGCCAAGAGCGATGTGTCGACGCCACCGTTTGATGCTCTTATTACGGACTTTTTAAAAGACGGTCAGCAACTGGATGCTGTGAGTATAAAGACCAAGAGAATTGTAGTCTCGTCGGGTCAGCTGGTTATTAATGAAGCCAAACGATCTGATTATGGGAACTACTCTTGTGCACTGACCAATACTGCAGGCACGACAATGGGCTATACACATGTTACAATCAAAGAAATCCCTGAAATCAAAGATAGCCGTCCTGTCCTTGTCAGGGATGGTTTACTGGCCCTCCTAACTTGTGTGGTCTCTAGTTTCCCACAAGCGAACTTAACTTGGAAAAGAAATGGGGCTGTACTTGATGGGGGCCGCTACAGCACTTTTAATTACACGTTGGCCATCCATGGTGTGACTGCTGAAGATTCAGGCGACTATCAATGTATTGCCGCCAATGAACTCGGCAAAGCCATGAGCAAAGTGACACTCACTGTTGGCGAACCATCCAAATTTTTGTTTGGACCATCGCACCAAACAGTCACAAAAGGAGAAGCAAAAACTCTCAAATGTGGCGTCCAAGGAGAACCAAAGCCAACGATCACGTGGAAAAAAGATGGAAAAGTTGTTACCCCGGATGAAAATCACGTGATCACTCCAGGCGTGCTTACGTTAAATAGAGTTGTCGAGTCTGATATAGGTTATTACGCATGTATAGCACGAAATCCTCAGAATATTATCACATCCTTTGCCTCTCTCATAATGATAGGTCCGCCTATCATCGATATACCTCCCAGCAACATGTCGGTGTTGTCAGGCGCTAATGTAACGTTCTACTGTCAATCTCTCGCCTTCCCTGAGCCTGCGATCAAGTGGAAGAAGAACGACAAACTCCTCAAAACACAGCATGGCAATACACGTGTTAAAGACACTCTTACTCTATATAAAGTCACAATCGACGACGCAGGACCAATCACGTGTGAGGCATCAAATGGCAAAGGATCTGCAAAACAAACCGTTTACTTGAGTGTAGACGGACAGACAGGAACCATCAAGCTGGCCTCTAAAAAGCCAAAAACTAAAGGAGGCCTCAGTGTTGGAGTAATCGTTGCCGTTGTAGTAATATTAGCAGTGATACTTTTGGTGATCATAGGCCTCGTAGTCTACCGATTCTGCGTGAGCAGGTACAACATCAGGGGGGACACGAGCTGTGTCAGGTACGAGCTTGGTGACGACAGTGGGAAACCAGATAGACTATCCGCTCTAAAATACAAGATGAGACCAGGTGGCAGAGGTGCATCTACACCGATGGGCATGTACGACGATAGTAAACCCTTTGCCGACCATGACTCTTTATAA

Transcript

gene02755.t1

Protein

gene02755.t1

MTSKSTQRMVSLVISVYCIVYFNARAVGSVDLSSSIWTESKCPEGTFKKDLYCLLNCGPGLYGNIATRTCLACSKACRTCRNGVLNDQCSSCYDPYYLYRNTCRKGCGELFKQGPPSSKIRLISDGSHFQGRLEVLREKTWGTICDDGWDINDAQVVCRELMLGDALAAVTMGRLGTGSDDQPIWLSKLQCTGNESRIDICGHKPWGTHSCGHFEDAGVICSGPDSTRRCVTECGPGYYKVPKSASCGVCAPECLACANTSTSCMGCGGTTFLKGNKCVRECGEGYFGNPDGRVCQKCDPSCRICSGNAKKCTGCEDDRFLSNTTCVKKCSVVEVAQQRLIRLSGTGRSSPYEGRVEVYRDGEWNTVCDDYWDFREATVVCRQLRMGRAIKSSSRGKFGPGSGRIWFDKLACTGSEKSIFDCPYGKVVWNSRCYHIKDSGVVCSGPQSGNPLTNMCVKECREGFYKDRNDLCKPCNVARCAACIGFSFRCTKCKAPKFLKENNCVSDCGSSSYGHLLSGTCKTCDKKCVSCANGNDGTNCTSCSAPLTLKDGKCTGSCRPDLYQHMGKCIKDCPIGYYSLSFNFTCLKCPKECFSCVYDQSKNAPKCILCKPPLVSNNGACTPNCSVSGKVSFPVANATGSVTIRLVNGSDYLEGLLQVFHNGEWGTICDDGWDYLESKVLCKQLNLGVQSSKPIGNIPKGTGRIWLDEMFCTGREKSLEDCVHKPWGENNCNHEEDVIVRCSGPGVRKCQDKCPDSYYATSGECKRCDASCATCVGNSTNCIKCTSGYYKNGSTCVTSCGDGFFLEPTTMECQSCNKTCATCVGNAMNCTSCAKPLYRKGSQCLPSCDPWYEPAVTHGIRLAGTKRRDNLEGRVELYYNGVWGTVCDDGWDIREATVACRMLNLGNASEAITTARFGAGKGTILLDDVNCLGNENSLGKCTHRGWGVENCEHSEDAGVRCSGPDRSRDCIEHCTNGYFKNSTTRTCGKCSPDCKTCMDFPDNCMSCEFYEFLNISSVRNICVQDCGDGSYADNSTRECKPCSPNCTGCFGDPTNCTSCSFGKFLDTETNICVSSCKDKTLINGVNDIRLAGTNKTTFGRLEVKYKGKWGTVCDDSFDQKDRDVACRQLKLGKGVGIKSSAYYGQGTGKIMLDDLQCRGTERSLFDCRMNSGGIGHGNCGHGEDVGIICSGPDTSHRCVRSCPAGFFKVKDKGKDVCKKCSSSCQACIGKQDNCNKCSPPLFLEGTKCVRKCTLGRYGNTISRKCLPCNLNCQTCLDGVSDNLCKTCAKGLVLNGTLCTKECGSMRSVEELLPPRPAKPSVRLVGGKTKQEGRVEVLHEETWGTVCDDQWDLNDAHVVCRELGFGKALKAPLHAEFGKGKGIIWIDNVDCYGYESSITQCRNHGWGINNCNSDHGEDASVVCDNTTIEDVANNYCREVLQQSCSNDKPCFSGVTCVNLGLLTNTGKTESVCLQCPDKYVGDGRICRGCSCCFSFCKSVGCDDGSCGRDDVDDDGCGGSGAGGSSVVVTVMVVEKVGPSGGGGGGGGGGSSGGSSGGISGGGGSSGGGGSGGGGSSGGGGCSSGGGGGDTGAGGGGDSGGGGAGGSSGGAGGSSGGAGGSSGGGGGDTGAGGGECDGVVSSTKPEFASEMPSNITFIAGNVIRIGCSAKSDVSTPPFDALITDFLKDGQQLDAVSIKTKRIVVSSGQLVINEAKRSDYGNYSCALTNTAGTTMGYTHVTIKEIPEIKDSRPVLVRDGLLALLTCVVSSFPQANLTWKRNGAVLDGGRYSTFNYTLAIHGVTAEDSGDYQCIAANELGKAMSKVTLTVGEPSKFLFGPSHQTVTKGEAKTLKCGVQGEPKPTITWKKDGKVVTPDENHVITPGVLTLNRVVESDIGYYACIARNPQNIITSFASLIMIGPPIIDIPPSNMSVLSGANVTFYCQSLAFPEPAIKWKKNDKLLKTQHGNTRVKDTLTLYKVTIDDAGPITCEASNGKGSAKQTVYLSVDGQTGTIKLASKKPKTKGGLSVGVIVAVVVILAVILLVIIGLVVYRFCVSRYNIRGDTSCVRYELGDDSGKPDRLSALKYKMRPGGRGASTPMGMYDDSKPFADHDSL

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00530	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001190	Domain	SRCR domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR006212	Repeat	Furin-like repeat	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017448	Domain	SRCR-like domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036772	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR052291	Family	Scavenger receptor cysteine-rich domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19331	SCAVENGER RECEPTOR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-