Detailed information of gene02729.t1 in Actinoscyphia liui

Genomic Location: chr1:41388448...41406220
NR annotation: XP_031566214.1, protocadherin Fat 4-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P35447Spondin-1 OS=Xenopus laevis OX=8355 GN=spon1 PE=2 SV=1
Q6P4U0Thrombospondin type-1 domain-containing protein 7B OS=Mus musculus OX=10090 GN=Thsd7b PE=2 SV=1
Q2PC93SCO-spondin OS=Gallus gallus OX=9031 GN=SSPO PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan
PF00028CadherinCadherin domainDomainInterproscan
PF19028TSP1_spondinSpondin-like TSP1 domainDomainInterproscan
PF00090TSP_1Thrombospondin type 1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR036383Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR039942FamilySomatomedin-B and thrombospondin type-1 domain-containing proteinInterproscan
IPR000884RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR000436DomainSushi/SCR/CCP domainInterproscan
IPR044004DomainSpondin-like TSP1 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20920RPE-SPONDINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

TOP