Detailed information of gene02549.t1 in Actinoscyphia liui

Genomic Location: chr1:38413957...38453164
NR annotation: KXJ17657.1, CCR4-NOT transcription complex subunit 1 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A5YKK6CCR4-NOT transcription complex subunit 1 OS=Homo sapiens OX=9606 GN=CNOT1 PE=1 SV=2
Q6ZQ08CCR4-NOT transcription complex subunit 1 OS=Mus musculus OX=10090 GN=Cnot1 PE=1 SV=2
A1A5H6CCR4-NOT transcription complex subunit 1 OS=Danio rerio OX=7955 GN=cnot1 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16418CNOT1_HEATCCR4-NOT transcription complex subunit 1 HEAT repeatDomainInterproscan
PF16417CNOT1_TTP_bindCCR4-NOT transcription complex subunit 1 TTP binding domainRepeatInterproscan
PF12842DUF3819CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819DomainInterproscan
PF04054Not1CCR4-Not complex component, Not1RepeatInterproscan
PF16415CNOT1_CAF1_bindCCR4-NOT transcription complex subunit 1 CAF1-binding domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032194DomainCCR4-NOT transcription complex subunit 1, HEAT repeatInterproscan
IPR040398FamilyCCR4-NOT transcription complex subunit 1Interproscan
IPR032193DomainCCR4-NOT transcription complex subunit 1, TTP binding domainInterproscan
IPR038535Homologous_superfamilyCCR4-NOT subunit 1, TTP binding domain superfamilyInterproscan
IPR024557DomainCCR4-NOT transcription complex subunit 1, domain 4Interproscan
IPR007196DomainCCR4-Not complex component, Not1, C-terminalInterproscan
IPR032191DomainCCR4-NOT transcription complex subunit 1, CAF1-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13162CCR4-NOT TRANSCRIPTION COMPLEXInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000288Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0017148Biological Processnegative regulation of translationInterproscan
GO:0030015Cellular ComponentCCR4-NOT core complexInterproscan
GO:0060090Molecular Functionmolecular adaptor activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12604CNOT1, NOT1; CCR4-NOT transcription complex subunit 1-Messenger RNA biogenesisko03019deepkoala

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