Detailed information of gene02134.t1 in Actinoscyphia liui

Genomic Location: chr1:33406753...33410573
NR annotation: XP_020894408.1, mismatch repair endonuclease PMS2 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P54278Mismatch repair endonuclease PMS2 OS=Homo sapiens OX=9606 GN=PMS2 PE=1 SV=2
P54279Mismatch repair endonuclease PMS2 OS=Mus musculus OX=10090 GN=Pms2 PE=2 SV=2
F1NQJ3Mismatch repair endonuclease PMS2 OS=Gallus gallus OX=9031 GN=PMS2 PE=2 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01119DNA_mis_repairDNA mismatch repair protein, C-terminal domainFamilyInterproscan
PF13589HATPase_c_3Histidine kinase-, DNA gyrase B-, and HSP90-like ATPaseDomainInterproscan
PF08676MutL_CMutL C terminal dimerisation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014762Conserved_siteDNA mismatch repair, conserved siteInterproscan
IPR014721Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR013507DomainDNA mismatch repair protein, S5 domain 2-likeInterproscan
IPR036890Homologous_superfamilyHistidine kinase/HSP90-like ATPase superfamilyInterproscan
IPR002099FamilyDNA mismatch repair protein MutL/Mlh/PMSInterproscan
IPR042121Homologous_superfamilyMutL, C-terminal domain, regulatory subdomainInterproscan
IPR037198Homologous_superfamilyMutL, C-terminal domain superfamilyInterproscan
IPR014790DomainMutL, C-terminal, dimerisationInterproscan
IPR042120Homologous_superfamilyMutL, C-terminal domain, dimerisation subdomainInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR038973FamilyDNA mismatch repair protein MutL/Mlh/Pms-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10073DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTLInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006298Biological Processmismatch repairInterproscan
GO:0030983Molecular Functionmismatched DNA bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0032300Cellular Componentmismatch repair complexInterproscan
GO:0032389Cellular ComponentMutLalpha complexInterproscan
GO:0140664Molecular FunctionATP-dependent DNA damage sensor activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10858PMS2; DNA mismatch repair protein PMS2-DNA repair and recombination proteinsko03400deepkoala

TOP