Gene detail

Detailed information of gene01829.t1 in Actinoscyphia liui

Genomic Location: chr1:28883423...28901637
NR annotation: XP_020907769.1, katanin p80 WD40 repeat-containing subunit B1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene01829.t1

ATGGCTGCTAATAAACGAACTTGGAAACTTCAAGAGTTTGTGGCTCATGGATCCAATGTCAACTGTTTGGCACTGGGCCCCAGCTCAGGGAGGGTGATGGTGACTGGAGGAGAGGACCGTAAAGTCAATATGTGGGCTATTGGAAAACCTAATGTTATAATGAGCCTGTCTGGTCACACAAGTCCTGTAGAATGTGTCCAGTTTAATATTGGTGAGGATCTTGTCCTAGCAGGATCACAGTCAGGAACTCTTAAAATATGGGACTTAGAGGCAGCAAAAATTCTTAGAACCCTGACAGGGCACAAAAGTAGTATACGAAGTCTAGATTTCCACCCCTATGGAGACTTTGTGGCATCTGGTTCATTAGATACTAATTTAAAGCTATGGGATGTAAGAAGGAAAGGCTGTATATTTACATATAAGGGTCATAGCGATTGTGTGAATAACTTAACATTTAGTCCTGATGGCCGATGGATTGTATCGTCTGGTGAGGACGGCTCAGCTAAGTTATGGGACCTTACTGCTGGCAAGCTCATAAATGACTTTAAGAATCACACTGGTCCAGTTAATTGTGCTGAGTTCCATCCCAAAGAATTTCTTTTAGCCACTGGAAGCAGTGACAGAACAGTGAAATTCTGGGATCTAGAAACATTCCAGATTGTATCAAGTACAGATATAGAAACATGTCCAATAAAATGTATAAAGTTCCATGCAGATGGAATGGCATTATTTAGTGGAGCACAGGATTCATTAAAGATATATGGCTGGGAGCCTGTGAAATGCTACGAAAGCTTCCCACTAGGGTGGGGTAGGGTTGCAGATCTGTCGCTATCCTCAAATCAGATGATTGGTGCTGGATTCTCGCAAACAAATGTGTCAGTATGGGTCATAGATCTTGGGCATTTAGAAAACCTCATAGCAAAGGCAAATGAAGAGAAAACAGATGTAGGAAACTTTGTTGGGGAAGTTCCAAAGGAAAGTGCTCCAGTCATTGAACAACTACCTCCAAAAATAACTAACAATAAAACTCCACCAAGAAAAGCTTTCAACACAGACAGACCACATACAACATCATCAAAAACAAAGTCATCCCGTCCGAACCCTCCAGTAGTCAAGGAGGAACCTCAGGAAGAAGATGATAAAAATATTAACAAAGTAGATGATAACATTGATGAAATCTTCCAAGCAAGGAAAAAACTAGATCGATCACCAAAGCTTAAGAAGAAACTTGAGCCATTCCAAGCTCCTGTGGATGACAATCCAGCTCCAGTTAAAACACCTAATATTAGTAAACTGCCTGTTAACCCTGACCCACCAAAGCCTGAATCAGTTTTAGCACAGACTAAAAATATAGTCCCCTCAGACAGAGTCAAACCTGCTGGCCTGCATATGTCAGACTTTTTACCTCCTAATCCCGTAGTACAACCTGAACCAGTCAGAGAATCTTACAAAGATAACAACTTTACACATCCTGTGCCTCAGATATCTGAGGCAGAGGCTATTGATATGCTAACCAAAAGTCATTCGTCAATCTGTAATATAATGTCTGTAAGACAGATGAATTTGTCTATGATAGCTAAGTACTGGGGAGAAGGTGAAATCAAGGTTGCCATACAGACTGCAGTCAATATGAATGACCCAGCAATTTTAGTAGATGTGCTCAATGTCCTCTGCCTCAAACAGACTCTTTGGAATTTAGACATTTGTTTAATAATTTTACCTCAACTAAAAGAGTTATTTACCAGCAAATATGAAAGTTATGCACAGGCAGCGGCATCTTCACTCAAGTTGATTATACGAAATTTTGCTCCTGTGATTAAAAGTAATATGTCTGCCCCTCCAGCATCTATTGGTGTCGACCTTGTCAGGGAAGAAAGATATAAGAAATGTCAAGCCTGTCACGCCCACCTACAATCAATTCGAAGTGTAATATCAAGCAAAACAGCAATGTCTGGAAAAATGGGTAGTCTGTTCAGAGAACTGTCGTTGGCTTTTTCTGCTGTGGATTGA

Transcript

gene01829.t1

AAAACTTGCTGTCAGATCGGCGTGGTCGAATATTGCAATTTTTATCCCCAAAATCATCACTTCTGTTTCTCCAGAACACTGTGGCACCATCGCTGAACGTTGTCAAGAATGTGACCGGAGTTTGACTCTCATATTTGGGAAGAAACATTCACTTTTGGCTCGAGAAAGTCAACCGTATTGAGAGCGCAAAATGGCTGCTAATAAACGAACTTGGAAACTTCAAGAGTTTGTGGCTCATGGATCCAATGTCAACTGTTTGGCACTGGGCCCCAGCTCAGGGAGGGTGATGGTGACTGGAGGAGAGGACCGTAAAGTCAATATGTGGGCTATTGGAAAACCTAATGTTATAATGAGCCTGTCTGGTCACACAAGTCCTGTAGAATGTGTCCAGTTTAATATTGGTGAGGATCTTGTCCTAGCAGGATCACAGTCAGGAACTCTTAAAATATGGGACTTAGAGGCAGCAAAAATTCTTAGAACCCTGACAGGGCACAAAAGTAGTATACGAAGTCTAGATTTCCACCCCTATGGAGACTTTGTGGCATCTGGTTCATTAGATACTAATTTAAAGCTATGGGATGTAAGAAGGAAAGGCTGTATATTTACATATAAGGGTCATAGCGATTGTGTGAATAACTTAACATTTAGTCCTGATGGCCGATGGATTGTATCGTCTGGTGAGGACGGCTCAGCTAAGTTATGGGACCTTACTGCTGGCAAGCTCATAAATGACTTTAAGAATCACACTGGTCCAGTTAATTGTGCTGAGTTCCATCCCAAAGAATTTCTTTTAGCCACTGGAAGCAGTGACAGAACAGTGAAATTCTGGGATCTAGAAACATTCCAGATTGTATCAAGTACAGATATAGAAACATGTCCAATAAAATGTATAAAGTTCCATGCAGATGGAATGGCATTATTTAGTGGAGCACAGGATTCATTAAAGATATATGGCTGGGAGCCTGTGAAATGCTACGAAAGCTTCCCACTAGGGTGGGGTAGGGTTGCAGATCTGTCGCTATCCTCAAATCAGATGATTGGTGCTGGATTCTCGCAAACAAATGTGTCAGTATGGGTCATAGATCTTGGGCATTTAGAAAACCTCATAGCAAAGGCAAATGAAGAGAAAACAGATGTAGGAAACTTTGTTGGGGAAGTTCCAAAGGAAAGTGCTCCAGTCATTGAACAACTACCTCCAAAAATAACTAACAATAAAACTCCACCAAGAAAAGCTTTCAACACAGACAGACCACATACAACATCATCAAAAACAAAGTCATCCCGTCCGAACCCTCCAGTAGTCAAGGAGGAACCTCAGGAAGAAGATGATAAAAATATTAACAAAGTAGATGATAACATTGATGAAATCTTCCAAGCAAGGAAAAAACTAGATCGATCACCAAAGCTTAAGAAGAAACTTGAGCCATTCCAAGCTCCTGTGGATGACAATCCAGCTCCAGTTAAAACACCTAATATTAGTAAACTGCCTGTTAACCCTGACCCACCAAAGCCTGAATCAGTTTTAGCACAGACTAAAAATATAGTCCCCTCAGACAGAGTCAAACCTGCTGGCCTGCATATGTCAGACTTTTTACCTCCTAATCCCGTAGTACAACCTGAACCAGTCAGAGAATCTTACAAAGATAACAACTTTACACATCCTGTGCCTCAGATATCTGAGGCAGAGGCTATTGATATGCTAACCAAAAGTCATTCGTCAATCTGTAATATAATGTCTGTAAGACAGATGAATTTGTCTATGATAGCTAAGTACTGGGGAGAAGGTGAAATCAAGGTTGCCATACAGACTGCAGTCAATATGAATGACCCAGCAATTTTAGTAGATGTGCTCAATGTCCTCTGCCTCAAACAGACTCTTTGGAATTTAGACATTTGTTTAATAATTTTACCTCAACTAAAAGAGTTATTTACCAGCAAATATGAAAGTTATGCACAGGCAGCGGCATCTTCACTCAAGTTGATTATACGAAATTTTGCTCCTGTGATTAAAAGTAATATGTCTGCCCCTCCAGCATCTATTGGTGTCGACCTTGTCAGGGAAGAAAGATATAAGAAATGTCAAGCCTGTCACGCCCACCTACAATCAATTCGAAGTGTAATATCAAGCAAAACAGCAATGTCTGGAAAAATGGGTAGTCTGTTCAGAGAACTGTCGTTGGCTTTTTCTGCTGTGGATTGAATGTAAATAGTTCTAACATCAAGCTCTACAGTAGAGAGGTGTTGTGTTGGATGCCATGGACTACATACATTGTGTATGCAAGAAGACAGGTTAGCTCTTGACTTGCAATCAGATGTTGTCGTCATGAAGTATGCATAGAAAAATCAATGAAATGCCGTTGTGAGAAATGTCTTCTACATTCCCCTAGCTAAGAATATTAAGTGTTGTCACTGTAGCAGTTTATAGCATTGCTTTAATGCTTGTTCAGTTTTCATACAGTGTCCATGTAAAGCTCTGAATGTGCTATCGTTCTCATGTGATATTCGTTGTGAATGTTAATTGTGTTCATAGCATTCTTCGAATGATATTTATGAATAAGCTAATGTATGTAAATGCAATGAATAAAATAAACAATTCTCAAGTTTTAAGG

Protein

Uniprot

Uniprot term	Description
O61585	Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus purpuratus OX=7668 GN=KATNB1 PE=1 SV=1
Q9BVA0	Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens OX=9606 GN=KATNB1 PE=1 SV=1
Q8BG40	Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus OX=10090 GN=Katnb1 PE=1 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13925	Katanin_con80	con80 domain of Katanin	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR026962	Family	Katanin p80 WD40 repeat-containing subunit B1	Interproscan
IPR028021	Domain	Katanin p80 subunit, C-terminal	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19845	KATANIN P80 SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0008352	Cellular Component	katanin complex	Interproscan
GO:0051013	Biological Process	microtubule severing	Interproscan
GO:0007019	Biological Process	microtubule depolymerization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18643	KATNB1; katanin p80 WD40 repeat-containing subunit B1	-	Cytoskeleton proteins	ko04812	deepkoala