Gene detail

Detailed information of gene01108.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene01108.t1	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	chr1	15631623	15639124	-

Gene Structure

More details in Jbrowse Sequence

CDS

gene01108.t1

ATGGCCTTTAGAATATCAATCACTATTCTGATATTGTCATTGACGGTGATCAAGAGCTTCCATGTGTCAAAAGAAGCCCCTTCGCTTCAAAATCCGAGTATTTTACTTACCAAGATCAAGTTCAAGTCAAACTCGTTCAAAATCGCTCAGCCGAAGTCAACCTACGCATTTGCATGCATTAGGTCATTATCACGTCACCGTCACGGTCCTACGCCTGGCCCAGTTCTAAACCTTGGCTCTTCGCACGGACTAACACAGCTACTGCTAATCATTGCGTCTGATTGTTCTGTTATCAATCCTGGCCCAATTAAGAATCCATGCGGTATTTGCAACAAACCAACAAGGTCCAACCAGAAGGCAATCCAGTGTGACGAGTGTTGTCATTGGTTCCACGCCAAATGCATATCAATGTCTGCTCAATCGTATGAAAGATATGGGGACAATTCCAACTTAATGTGGCTATGTAATCTATGTACCTTCCCAAATTTTTCTACAACATTTCTCTTGAATGACATGGACCTGTCAGATGACAACAGCTTTGCTCCGCTTGCGAATTACGACACCACTAGCAGCGATATTGGCTCACCGCTATATGCGTCCAGTCCTACGTCGAAATTCCCACCTCCCGGCAATCGCTCTCGCACTCCAAGTCGGAAGCTTAAAATACTGTCACTGAATTGTAATGGTCTGAAAAGTGCAACCAAGAAAGCCGAGTTTCACGCTATCATTGAGCTCCATCAACCAGACGTTATCCTGGGCTGTGAGTCTAAAATTGACGCCTCAGTGCCAACCTACTCTGTATTTCCTGATACCTATGAGGTCTACAGAAAAGACCGAACATTGTCAGGAGGTGGTGTTTTCATTGCTGTCAAGAATGATCTGACAGCTTTGGAGGAATGTCGTCTAACTGTCGAGGGTAGTGAGATCATTTGGGCGTCACTGCAATTCGCGAAGTCAAAAAAGCTTTATTTATCAAGCTTCTATCGCCCCCCTTCACCTGGCACCGAACATCTGGACTTATTGGACGACTCCTTGGGGAAAGTCTTCAGCCGCGCCGCCAAGTTCCCACTTACTATCGTGGCCAAGTACGGGCTAACCCAGTTCGTCAAAGGCCAGACAAGATCAGCTTCTGGACGACTCCTCGACCTTGTGTTTTCCTCATATCCTAACACTGTGCAGGCATGCCATACCATCCCAGGCATTAGTGACCACGATGCAGTTCTATTCGAACTTGATATATCCCCTAAGTACTCCCCGAAGCCACCTAGAAAGATCTACAGATTCCACAAGGGTGATTATGATAGTTTGCGGACTGACCTAGCATCATTTACATCAACATTCGTGTCGTCTAATCCAGGAAACAACACTGTTGAAGACAACTGGACCACTGTCTCTGGGGAATTACAATCCTTAATTGACAAGCACATTCCCCATTTAATTACCAAAGGCAAGCGTCATTTGCCCTGGGTTAGCAGTGCTATCAAGCGTAAGATGAGGAAGAGAGATCGCTACTTCAAGAGGGCCAAACGCACCAAGAAACCGCAGCACTGGTCAGCCTATAAGAAACTGCGTAATGAGACTCAGACGCGCATCAAGAACTCACATAGCAGCTATGTTAATGATGTCCTAGGTGGGATTGTACCAGATGGCAGAGCCAACTCATCCTCAACTAAGAAGGCCTGGTCCTACTTAAAGTCCCTTCGGTCTGAGTCGACTGGTGTTCCCCCCTTACTACAGAACAATAGAGTTTGTACATCTGACTCTTCTAAGGCGGAGGCTCTTCGCGAGCAATTTGACACTGCGTTCACTGAGGAGGACCTGTCATCCATACCTTCCTTTGGTGACTCTCCATACAACAGTATGCTCGATATCCACATTTCCGTACAGGGTGTGAAGAAACAACTAGAGAAAATAGCTTCATTACCCTTCACAACAGTCCAGCATATAGTGACTACCGTAGACTGCCAACCAGTGCCAGGTAACGGTGTCCTGGTCTTCGTTGTTGGACAGCTCAAGACTGACAATGATCCTCCACACTCCTTCAGCCAAACATTTCTGTTGATGCAAGATACTTCGAGTGATGTGTATTATGTACTGAATGATATGTTTCGACTGTCACTTCACCATGGATAG

Transcript

gene01108.t1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628	PHD	PHD-finger	Domain	Interproscan
PF02136	NTF2	Nuclear transport factor 2 (NTF2) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR002075	Domain	Nuclear transport factor 2 domain	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018222	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR032710	Homologous_superfamily	NTF2-like domain superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007508	Biological Process	larval heart development	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0061343	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-