| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| gene00020.t1 | E3 UBIQUITIN-PROTEIN LIGASE RNF8 | contig002 | 223835 | 231476 | + |
| CDS | |||||
| gene00020.t1 | |||||
| Transcript |
| gene00020.t1 |
| Protein |
| gene00020.t1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|RING |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00098 | zf-CCHC | Zinc knuckle | Domain | Interproscan |
| PF00498 | FHA | FHA domain | Family | Interproscan |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000253 | Domain | Forkhead-associated (FHA) domain | Interproscan |
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR008984 | Homologous_superfamily | SMAD/FHA domain superfamily | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR017907 | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR036875 | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15067 | E3 UBIQUITIN-PROTEIN LIGASE RNF8 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000151 | Cellular Component | ubiquitin ligase complex | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005829 | Cellular Component | cytosol | Interproscan |
| GO:0006302 | Biological Process | double-strand break repair | Interproscan |
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0016567 | Biological Process | protein ubiquitination | Interproscan |
| GO:0035861 | Cellular Component | site of double-strand break | Interproscan |
| GO:0042393 | Molecular Function | histone binding | Interproscan |
| GO:0061630 | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| GO:0070936 | Biological Process | protein K48-linked ubiquitination | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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