Gene detail

Detailed information of ctg963-4.5-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg963-4.5-1	E3 UBIQUITIN-PROTEIN LIGASE MIB2	chr10	58886640	58902959	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg963-4.5-1

ATGGCGGCAGGTCTACGAGTTATTCGAGGACGCGATTGGCTGTCGGGTGACGTCGACGGAGGTGAAGGTCATCTCGGAACGGTGGTGTCATACGGGAAAGATGAAACAGCTGAAGTTATCTGGGACAATGGAAAACAAACTTTGTCTAGCATTGGGAAAGACAAAAAATACGAGCTGAGGGTTGTAGACAATGCTCCTGAGTTTGCCATCAGACTGTCACTTGCGGCGGCTGCGGAGAGAAAGCGCGTGCCTGCACGGGACACCTCGAAGAAGATTCGAACTAGAGGATTGTTTCCTGGCGCCGTCGTTACTCGTGGAACGCACTGGGATCAGGGGTATAAAGACAGTGGTCCAGGCAAGGAAGGGAGGGTAACTCTACTTGTGAGTTTTGACTCCAAGTCACCCAGGTCGGCGGTGCGTGTAGCGTGGGATTCACGGGAGACAACCACGTGTCGTGTGGGTCACCAGGGTCAGGTGGACATCCAGTGTGTTCGTGAAGCTCTTGGACCAGAAATCTACGCTGAACATCTGCCACTTTTAGATGTAGACACTGCTAAAGCGGGTAGACGTCTTCAAGAAGACAAAGCCAACTCTGGGAAGGGCTCGGCATCTGACAAAGGATCCACGAAAAGCGTGCCTGAACTGAAGGTTGGCAGCATAGTGAGGATTCTTGATGACAAGGCAAAAGTCGAATACTTGCAGGACGGTCACGGGGGATGGGTAGATATCATGGAAAAGTTTCTTGGTAAAGTTGGTAAGGTGACAACCGTGCATGGTACTGATATGGTAACTGTTAGCTTTGGATTACAAATGTGGGGATTCAATCCAGCATGCTGCGTACCAGCCTCCGAGTCCGAACTGCCGTCAGATATAGATATACCGGAATTGAAAGATCTCCATTCAACCGGCGATATTCTTAAACGAGAGGGGTCAAAGGAATTCTTAGAGGCAATTCAAGATTCAAATGTGGAGAAAGTCAAGAAGGTTTTTGGAAAATTTCCTAAACTAGCAAATGGGCGTCCAGAGAATGGCATCACTTGTCTGCACGTTGCTGCTAATAAAGGGAAATTGGAAATTGTCAAGTTTCTCGTGGAAAAAGAGTTTGACAAAGATGCCAAAGACGCATCGGGTGACACACCTCTCCTAGAAGCATTGAGCGGAAAACACGTAGACGTTGCTCGGTTCCTAATTGAAGCTGGCACTGATTTGGACATCAGCAACGATAACGGCCAAACGGCAATGCACTATGCAGTGCGTGCTGGAAATCCAGCTGTTGTTCGGGATCTGATCGTGCGAGGTTGTGACGTCAACGTCACGGACAATACTGGTGACACTCCTCTTCATGATGCCATAGGTCAAAACGAAACCAGCTGTGCCGAAATTATTCTCACGTCGCCAATCCTCGATTTGACTATTGCCAATGAGAGAGGGTTTAACCCTCTTCACTGGGCTGCGTACCATGGAAAAACTGGTGGTGCTCTGTTTGAGAAAATCTTACAGAGAAACAAGAATCTCCTGGAGGTGTGTATGGAGCAAGGACCCACCCCACTCCATATTGCAGCCATAAACGACCACGCAGAAGAAGTGAAAATACTTATTAAAAAGGGTGCAAACGTGAATGTCAAAGATACGGAGAACGAAGCAACCCCATTACATCTCGCTTGCTCACATGCCTTTATAGGTGCAGCTAAGATCCTAGTGGCCGCAGGAGCCGATGTTAACATGGGCGATGTTAACAAACGAACACCTCTACACGTAGTGATGGGATCGTCTGAAGAAGTAACAGATGACTCAGTAGGAGGTGTTATGGGAGACTTGCTGAAGAAGCTGGTGAAAACAACTGTTGGCAGTAAACAGAGTCGTATTAAACTGGCCACCTTCCTGTTGGAACACGGGGCAGACGTCAACGCCAGAAACAAAGACGGAAAAACACCTGTTGATGTTTGTACTGATAAAACGCTCAGAAAAGCTGTTGAAAGTTTCAAGAAGGAAAGAAATCACAGGGATGTGGACATTAGTAATCCAGACCAGCCACTTCTGGACATCATATCCAGAAGACAATGTCGTGACAAAGGTTATGAAAGAGGTGAGGTGGTTCCGAGAACAAAATTGGTCACCTACGACAGGAAGGAGAATGAGATGTTTTCATTATCCCATTCGAGAGAATGTCTCACCGACATGGATGGTGTACGGTCATAA

Transcript

ctg963-4.5-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF06701	MIB_HERC2	Mib_herc2	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF18346	SH3_15	Mind bomb SH3 repeat domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR010606	Domain	Mib-herc2	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR037252	Homologous_superfamily	Mib/herc2 domain superfamily	Interproscan
IPR040847	Domain	Mind bomb, SH3 repeat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24202	E3 UBIQUITIN-PROTEIN LIGASE MIB2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg963-4.5-1 global RNA-seq network