Gene detail

Detailed information of ctg869-5.4-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg869-5.4-1	RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG	chr4	47542861	47564778	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg869-5.4-1

ATGTGTTGGTGGTCCGGATCCGAGCTGATTGCACGAGTGAAATACAGCAACACACTGCCAGATATTCCATTTGATCCCAAGTTCATCACCTATCCATTTGAATCAAACAGATTTATTCAGTACAAACCTACATCATTGGAAAGGTCATACAAATATGACCTCTTGACAGAGCCTGACCTCGGTGTCACTATTGACCTCATTAACCCTGATACATACAAGATTGATCTGAATGCATATCCAGATCCTGAGGATGAGAAACTGCTTGAAGAAGACCACAGCACACCGCAGGATTCCATAAGATCCCGCCACCACAGGGCTAATGTGTCCTGGCTGAGAAAAACCGAGTATATTTCCACTGAATACAACAGGTTCCAGCAGAAATCTGACCGCACTGAGATCAAAGTTGGCTTTAAGATGAAGCAGAATATGAAAGAAGAAGATGTCTACAAGGACCGAGACACACAGATCTGTGCAATCGAGAACACATTCAAAAAGGCTGACATCCAAATCATGAAACACTACAGTAAGCAAAATGTCACACCAGTTGAAGTGTTGCCTTTGTTTCCTGACTTTGAGCTGTGGAAGCATCCATTTGCCCAAGTTTTGTTTGATTCTGATCCAGCCCCTAAGGGAAGACCTTTGCCAGCTCAGCATGAGGAAATGTCACAAGCTATGATTCGAGGTGCAGTTGATGAAAGTGGAGAACAGTTTGTGGCATATTTCCTGCCGACTGATGAAACTCTCGGCAAGAGGAAACGAGATACAGAGGAAGACGTTGATTATGTCCCAGATGAAGAGTATGATTATATGTTGGCAAGGGAGTATAACTGGAATGTAAAGAACAAACTTTCCAAAGGATATGAAGAGACATATTTCTTTGTGATTCGAGACAAAGGTGTTTACTATGATGAACTGGAAACAAGAGTGCGTCTAAGCAAAAGAAGAAAGACAGGAGGCGGTCAAGTAGCTAAATCGAGACTGGTGATAAAGCACCGTGATCTCAATGAGAAGGAGATCAGTGCACAGGATGCTCGTCTAATGATGCTGGAACCTACACAAGAAGAAGAGGAAGAAGAAATGCAGTTTGACAACATTGCTTCAGACCAAGAATTCAAGACCCCTAGCGACAAGGGTGATAAGAGTGACCAGGAGGATGACCAGGCCAGCGTGAAGTCTGGAGCGAGTGGTCGCAGTCGAAGCCGTTCACGCAGCAGAAGTAGATCACGCAGTCGGAGTCGCTCAACAAGTGGAAGCCGTTCTCCTAGTCGGAGTCGGAGTCGAAGTCGGAGTCGGAGTCGGAGTGGCAGCAGAAGCAGAAGTGGCAGTAGGAGTCGAAGCAGCAGTGGCAGTGAGAAGGGCAGTGGGAAGGAAGACAGTGGCAGTGAGAGTGAGGCAGAAGACAAGGAACGTAAGAAGGAAGAAGAGGAGATCTTCGGAGCGGCTAGCAGTTCTGATAGTGATTGAACAAACCAAACTCTGCAAATGCAATAAAACTGGTTTACCCTCCATTGGCCAGTGTTCACAACTGCTGTTATTAGGGAAATGTAAATGAAAGTGCTTGGATTTGTGGATGTTAATTTAGCAAGTGTAAGTAGACACATAAAAGTGAAGCAGAATATATTGCATATGTTTGGAAATTCATGGTTTTATCTGAGAAAAAATAAACCAAATTAAATGCACAAAGATAGTTAACATATTTCAGTAATTTAGAGATGAAATGGGTGGGTTTAGTGGATACTATTACTGTGTTTCGTTGTTAACTATTAAATCTTTATAGTTAACAACCAAACACAGTGATATTATCCATGTTCTAATACTACACCTAGAGTATATGAGTATCTGTAAAAAATGTTATTATGTTTTATGAAAAACCTAATTATCTATTCTCCTTACTCAGTGAAAACGCTTATAGTAAGTAACAGTATGACATCATATTTCTTCTTTCTCTTGACTTGAGAGTGAAGCAAATGGCAAATTTATCAGTATTTGTAGTCTATTTTGAACATGATTTATTGTAATACAAGATACACACACACACAAAATGGTTTGCTGTTAATATTTTTGTGGCAATACGTATGGATAAGATTGTAGTTTATATTTGTGAAGCGGTGTTTCAACTTCATGTTGACTTTTACTAACATATTTTCACATAAATAAAATAATATTAATTTACGAAAGGGCAAGTATCATTTGTGTAAGTTTTTAAACATTTTGCAATATTTTAAAGCAGTTAATAATTTAAAATTGCGTTTAAAAAATTGATAAGCAATTCCATCTTGTCTTTACAATTTGATTGTCCCAAAAAGTATGTTCTATTACAAAACTGGTGGAAATTTTGACCTGGGACAAGGCTTGATTCAAAATTTCTATCACTGAGGGTGTACTTTTTCTATCCCACATGACCATATGATGCAGTGTTTCTCTCATCCATTCGGTAAATAATCTCTTATTTTACATGAACAGAAATGTTTGAAAATGTAACTTTTTCATTAGACTATTTTATCATAAATAAACTACACTATTATATTTGCTGTGTTTGTTTCATGTGTTAAATATAATATAACACCACAAATTAACAAGACAGCTTTTATAATGAAGGTTTTAATAACACAATATCAATCTAAAACTTGTGTGGTGACCTTAGATCACGAACTTGCATTAATATCACTTTTTATATTACCAAAGTCGTCATACTTGTTAGTTGCAATCATGCCCACGACAGATTTAGAGAATACTCGACAAGCTACTAGGCAATACCATTTATCTTGCACTCATGAATTGATGTTGTCCTTTCCAAGCCTGTGTAAGATAAACGGTATTGCCGAGTAGCGAGTTGGGTATTATATTTATTACCCATTATAATACCAATTTTATCATTTTATTGAAGATTTTCAAACAATACTGTTATTGAAAATAAGTTTGCAAGTTGAGAACAAGAGATAGCATTGTGTCATGGCTGTGAAGTACATATCGCTGATGGCGTAAGTTAGTTGTTGACATGACTGCCACCATGACACTCGATTAACCACTGCACGCATTAAATTGATCAGCCTATAGTGAAGCACTGATTATGACATCAAAACTTAGGGGACGATTTTTTTTTTCTTTCCTTTGTGAAAGATCATTCTTCTTTCCTTACTGCTCTCTGCCCATATGGGTAACTATCTTTCATGGGATAGCTCTGTCCTATATACCTAAGGATGAGAGAAAAAGTCATCTTGCAGTCTTTAGCATACACCGGCAACCCTGGCCTGTGGCCGTCTACATGCAGTTGATTTAGGAACACGAGTGATTGTTAACGTTATGAAGTTTCTTAAATCTGGAGCTACTTTATGTTGCACTCTAGGTCATCAGGCTCCATCTATTCAGCGAAATGGTGGTCTTTTCTTTTTCTTTTTTGCCTAAAATCGTCTCAAGTCACCGAGTTACTAATTAGTAATGAGACGTCCAAGTTGCCATAATGGACAAATTCCAATTCCAGAAACGAACATTTGACATTAAGACACCATCTTGTTTAGTATTATAGTGTCGATCCATGTCGTCAAAGAAATAACAGGTTTAACTGTATAACCACTTGACATCGTGAAACCATTGCTCACAAATGTGTGGACTTACGTGGTGTACTTTATTCCTCTCCTTGTAATAAAGCTATGGCTGCTACTTCTCAATTTATTACATGTGTAAAATTTGTATGATTTTCTTACAATGAGCCAACACTGTATACATGTCCATCTCTGTCATGTTAATGGTTTTCACCTTCATTTGCATCATCACTAATGTTGAATGTCTGTAAAATAACATTAATTTCAGCATGTTCATTGTTGCATCACAATATGGTGTAAATATTAATAAAATAAAAAACTTTAAATGTTTTGTTCTCGAAGTGAGTGTTTATAAAAATGTTTACACTGGAACAGCATGCACACTATATTAGTGGCCGAAGTCCCAAGTGTTCGGTATGGAGATGATAGCGGACCCATTAATTCACTTGTTTAATTCTCAGTTTTATGAAAATAGATTTGCTAAGGAAGGATATTTGACATGTGGGCTGAACCAATTATGGGTATCGAGGCATACTCACAGAAGTTTTATTTTGTATTATCACAATCCAATTTTCCAAGTGAACAAACTAGGCAACATTCCAT

Transcript

ctg869-5.4-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03985	Paf1	Paf1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007133	Family	RNA polymerase II associated factor Paf1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23188	RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg869-5.4-1 global RNA-seq network