Gene detail

Detailed information of ctg84-14.14-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg84-14.14-1	CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81	chr4	22954800	22967891	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg84-14.14-1

ATGCCAGATGTTTATACAGTTCTTCGGCGCCTAGCATCATGGAAGTACGTAATTACAACTGATCTTATACATGCATTCTACCAGATTCCATTGGTACGTCAATCTGTGAAGTACTGTGGTGTGGCGACACCATTCAAGGGAATTCGCGTGTATTCCAGATGTGCTATGGGTATGCCTGGTTCTGAAACTGCCCTTGAGGAGCTCATGTGTCGAGTTCTTGGTCATCTCTTACAGGAAGGTGTTGTCACAAAGTTGGCCGATGATTTGTATTGTGGAGCTGATACCCTCGAAGACCTTTTGGCTACTTGGCACTGTGTGCTTGATGCTCTCCAAGTCAATAATATCAAGCTATCGCCCAATAAGACTGTCATCTGTCCTTTATCTGTTATCATTCTTGGATGGAAGTGGAAGCAAGGTACTATCACCTCAACTCCGCATAGAATAGCTGCTCTTTCCTCATGTCCTGCACCCGAAAAGATTCATGGTCTTCGATCCTTCATTGGCTCTTACAAAGTATTGGCTCGTGTTCTCCCACACTGCGCTAGCCACATTGCACCACTTGACAATAAACAAGCAGGGAAACAGTCTCAAGACAGAGTCAACTGGTCTGACACCTTAGTGCATGCCTTTAAATCTGCTCAGATGGCTCTTCACTCCAATCAAACAATTACATTACCTTGCCCTGATGATCAGCTGTGGATAGTAACCGATGGTTCCGTGAAACAAAATGGCATTGGTGCTACATTGTATATTACTCGGGAAGCATCCATTGCTAAAGATGGTCTTCTCGTTGTGAAATGCATTGAGCCATTAGTACCTATACGTGAATGCACTATTGTACCACAAGAAACACTTGATGGTCTTATCACAGCTTTACACATACAACTTGATCACCCATCATGTCATCAACTGAAGCTTGTGGCACTCAATACTCTGAAGAAGTTTCCGCTTACCTTGTCGTGTGGTAAAGACTGCCGAATGCTGCAAAACTTTGGAGACAAAATCTGCAAAATGTTGGATGATCGACTCGCTAAACATGTGGAAACATATGGAACCACAGCTCCTATAGTAAGAACAGAATCTGTGATCACCTCACGAGCTGGTACAGGGATATCCACTCACACCACCAGCACTATTTCAACTAGCACAACCTCACCTAGAATGGAAATCTCAGGTCCTCGTATTGACTCAGGAATAGTCAGTGACGAATCGGACGTTGATGAGCAACCATCACAACAGAGGAAGCGGCGGAAGTCTTTGGGAAACAAGGCACCGCGGGAGTATATTCCAGCCTTCAGGTCGGGACCGTACGCCATTTTACTGGCTCTCTACAGAAATGCACAGAATCCAAATAGCATTCATGACTTTATGACCCATACAGAAATAATCCAAGCAGCAGAACCATTGGCCGATAATTCCTTTACAGTGCCTGACCCTGGTTGTCGTTACACTGCATGGTCGTCGATGGGGACTCTTATTAAAAAGGGGCTGGTCATCAAAAACAGCAGTCCAGCTAGGTACAGTTTGACACAGTCTGGTAAAGACTTGGCTGACAGACTGGAATCAGTTGATGGCACTTCACCACATACCGCAGGAAGCGACAGGTCAGCAATGTCGACCAATAAAATCTCTCTGTCAGTCAAATCACCAGATGTTGAGAGTCTGTCTGCCATGGATGACTGGAACGATGGCATGCCCAATCTTCCATCACTGGATCTGCCACAAGTTCTCAGTTCTCATAAACAGAGTGAACAGCCTGGACTTCCACAGACTTCTAATAGGTTTCACTTTTGGTTTGTTACTGATGACAACCGACTTGTTACCAGTAAAGATGAAGCAGCTGTGTCCATAGATGAAGTGAATTCCATTAGTTTTCTTGTCAAGTGTAACTATCAACAGCTGTTAAAATCAGGCAAGACATACAAGCTGGATACGAGTAGATGCGACCTTTGTGCGGGCTTGTCTGATGTCGAGTTCGCGGCTTACCTGAAGGTGGTGTCAGCGAGGACCAAGAAGGTGGAATCTTCGAGGACCAAGAAGGTGGAATCTTCGCCTTCGATTGCTGACTCCGTGGCGGAAGAGTTACGTTCAATTCTACCGACCATGCTGGAAGAAACAATGGCGTCAATGGCGACCTTACCTAAATCGGCGAGTTCGGGGTCAGGTCCGGTTCCAGTCCCCTCTTCAGGGGGTGCGGCTTCTTCAGCTCCACCGTTACTTAAGACTTCGGATGACAGGCCTGCGGTCTCTACGCAGCCCTCTAAGAAGCCGGCTCATTCAGATAGACGCTCCACGGATTCCAAGGCTCACCGATCTTCGGCGGGGAAGTCCCCTTCGGCGCATCGGAGCCGGGACCGTAGCCGTTCCACATGA

Transcript

ctg84-14.14-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF21136	MUS81-like_WH	Crossover junction endonuclease MUS81-like, winged helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR027421	Homologous_superfamily	DNA polymerase lambda lyase domain superfamily	Interproscan
IPR033309	Family	Crossover junction endonuclease Mus81	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR047417	Domain	MUS81, winged helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13451	CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000712	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000727	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0006308	Biological Process	DNA catabolic process	Interproscan
GO:0008821	Molecular Function	crossover junction DNA endonuclease activity	Interproscan
GO:0031573	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0048257	Molecular Function	3'-flap endonuclease activity	Interproscan
GO:0048476	Cellular Component	Holliday junction resolvase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg84-14.14-1 global RNA-seq network