Gene detail

Detailed information of ctg531-2.5-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg531-2.5-1	DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED	chr4	66796421	66839195	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg531-2.5-1

CTGAAACTGAAAGTGGCTGATACCTGGCGAAAGAAAGTAGAAAATTAAAAAGAATGGTTTAGGATTTTTATACTAGCATGGCCAATCTGCCACGGCTAACAGGAGCCCTCAGGGCATTTGCAAATGTGTCGTCACAGGACAGTCACAGTGTGAATACAAGCAGGGACCTGTTGGAGAGACGCCGACTGCAGACCGAACTACAGAGCAAGGACAGCGATGCCTGGCAGAGTCTGGTGTCTCTGGTGAAGAACAATGCTGATGCTCAGATACAGGACATCAACGCGGCACTCAAGCAGCTCACTGTCAGTGCAAAGGCTGTTGTTGGCAATGAAGCAAGCTCAGACACAGTGGAAGGTGCAGCATCATACCTGTTTGATGTTTTCAAATTTTCCCGACATGTTGGTTCTCGAGAAACTGCCAAGATTCGTAACATATTTGGACCATTCCCAGCCTCAGCTGCAACAAAAGCCTGTGAAGTTGTCCAGAAGATAGTATCATGGCTACCGGAAGACGTTTTGTCCGAGTCGGACGAACCAGGGAGACAGGAAGCAGATGGGGCAGCCATTATTCAAGAGTTTGGAAAAAATTTGAAGTTTTCTTCCCCTGACTCGGATGGTATTAATGAGGTTCTTTCTAGTTCAGAATCAGAGGAGGAAAAAGAAGAACTGAATTTTGACTTAAAATATAACAGCTGTTCTCGTTCAGTGCCCAGCAAGGTAGAGAAAACAATCGAAGGAGCGGAATCTAAACGGTTTGATTATGCCTGGTTGCTAAGCGAAGTGAAGATATATTTTCCACATGAAGAGACATCGCTCGGGCTCACAGTTACAGATCTTGCCACCAGTTTGTTTGATGTTCTGTGTTCCATAAAGACGGATGAAGAGTTGCAGAATGAGTTGTTTGAATTGCTCGGATTTGATCGGTTTGAGATGATTGAGAGTCTCCTTGGCAACCGACGCAGTTTGATGCAGTCACTGATTGAGGAGTCTGCAAAACCCATTGCTACTGCAGGACAAAAGAAAAAAGGAGATCCTCAAAATAGGCCAGCTTATGGATGTCAAGTAACTATTCAAACTGAAGATGAGAAGCTCTTGAAGAAACAAATTAGAAAAGAGGAAAAAAAGATTTCTCGGAGAGATGGTAGGAAAGTGGAGGATGGTTCTGATCAAGGCATGGACTTCGACCCGCAGAAAATGAGAACACAGAGAGAAGAAGCATTGCAAGCTGCGGCTATGACCCCCTTGTTTCCCCAGCGTTCAAGCCACTATCAACCAAGAGAAAAGTTCCCTTTTGTGTTTGATACTTACGAGGAAGCCAGACACTCCTCAGCATATGTTGGTGGATGCAAGCTAGTCCTTCCAGCGGGGTTTGAGAGAAAGGAGGAGAAGACGTTCGAAGAAGTCAATATTCCTCCAATCCAAGCCGGTCTCACAAATGTGGGCAAGGAGCTTATTCCTATATCGTCTCTAGATGAGATTGGCCAGCTTGCGTTCAGAGGAATGAAGTCACTGAACAGAATCCAGTCGGTGGTGTTTGAGTCGGCGTACAGAACCAACGAAAACCTGCTCATTTGTGCTCCGACTGGTGCTGGCAAGACGAACATTGCAATGTTGGCCATCCTTCATGAGATAAAACAACACTTGTCGCAGGGTGTTATCAAGAAAGATGAATTTAAGATTGTTTATGTTGCTCCAATGAAAGCGTTGGCTGCGGAGATGGTTCGTAATTTTGGAGGTCGACTGGAGCCGCTTGGTCTGGTCGTGAGAGAACTGACAGGAGACATGTCACTCACCAAGGCTGAGATTCTTAAAACACAGATGCTGGTAACAACACCTGAAAAGTGGGATGTGGTGACCCGGAAAAGCACAGGTGATGTTGCTTTGGCTCAACTTGTTAAACTGCTAATTTTTGATGAGATCCACTTACTGCACGATGACAGAGGACCAGTCATTGAGAGTCTGGTTGCTAGGACGATTAGACAGGTGGAGAGTTCACAGAGTATGATCCGGATTATCGGACTGTCGGCCACACTGCCCAACTACCTGGATGTGGCCCACTTCCTCAACGTCAACCCGTACGTCGGACTCTTCTTCTTTGATGGAAGGTTTAGACCTGTTCCTCTCAGTCAAACATTCATTGGTATTAAAACCACATCTACTATGCAACAGATGATGGAGTTCAACCATGTCTGTTATGAGAAAGTTCTGTTCCAAGTCAAAGCAGGCTACCAGGTTATGGTGTTTGTCCATGCGAGAAATGAAACAGTACGCACAGCAATGGTGCTCAGGGATTTAGCAAAGAATAAACACCAGATTGGATTCTTCCTGCCTCCACAGGGACCCAAGTTTGGAGAAGCACAGAAAGTTACAATGAGGTCTCGGAACAAACAGCTGAAGGAGCTGTTCTCCGATGGGTTTGCAATCCACCATGCCGGAATGCTGCGTCAGGATCGTAACCTGGTGGAGAAGTATTTTTCGGCAGGCCTGATCAAGGTTCTCTGTTGTACGGCCACATTGGCCTGGGGCATCAATTTGCCAGCACATGCTGTTATCATCAAGATAGTTCTTGGCACGGTGACTAACGTGGAAGAGGCGGTGCGATGGCTGAGCTACACGTACCTGTATGTGAGGATGAGGATCAACCCGCTCGTGTACGGGATATCACACACCACACTGGAAGAAGACCCATTGTTGGAACTTCACCGTCATGAACTGATAAGAGATGCTGGGAGGAAGCTGGACAAAGCGGAGATGGTTAGGTTCGACGAGAACACTGGATACTTCTTCTCCACTGACTTGGGACGCATTGCGAGCCACTTTTACATCAAGTATGACACTGTGGAGATGGTGAATGAAACCTTTGTTTCACTCATGACAGAGTCTGATGTGTTTAGTATTTTGTCAAAGGCGCAAGAATTTGATCAGATAAAGGTCCGTGACGATGAAATGGATGAGCTGGAGAACTTGGTCCATGATGCCTGTGAGATGCCTGTCCCGGGTGGTAAGGAAAACACACACGGCAAAGTGAACATCCTGCTTCAGTCGTACGTGTCGCGACACATGATCGACAGCTTCTCTCTCGTCTCAGACATGTCCTATGTAGCTCAGAATGCTACACGTATCATGAGGGCACTGTTTGAGATTGCCCTGAAAAGGGGTTGGCCCATCATGGCCAGCCGCCTCCTACGACTGAGCAAGATGGTTGACAAGCGACTCTGGGGATTTCAGCATCCACTCCGTCAGTTCATGATTCTCACACATGAGATATTGGAGAAGCTCGAAAGGTCAAGATTGACCATAGATCGCCTCAAAGAGATGACTCCTCAAGAAATAGGTCACATGATCCACCATGTTAAGATGGGTGGAGTCGTTAAGAAATGTGTCAGTCATTTACCCTGTCTGGATCTGGATGCCAACATTCAGCCAATCACACGCACCGTACTCCGAGTGAGGCTCACCATAACGCCAGACTTCAAGTGGGATGACAAGGTCCATGGTGGTACAGCGGAACCATTCTGGATCTGGGTGGAGGACCCAGACAACAACCATATCTACCATTCAGAGTACTTCATGCTACACAAGAAACAGGTTGTCAATGCAGAGGCACAAAATCTGGTGTTCACCATTCCTATATTCGAGCCCCTGCCGACTCAGTATTATGTGAAGGCCATATCTGACCGATGGCTAGGATCAGAAGCTGTGTGTCCTATTTCATTCCAGCATCTCATACTGCCAGAGAGACACCCACCCCATACAGAGCTTCTTGATTTGCATCCGTTGCCGATCACTGCCCTGAACGATCCGAAGCTGGAGGTGCTGTACAAGTTCTCCCACTTCAACCCGGTGCAGACTCAGTTCTTTCACACTCTGTATCACACGGACAGTAATGTGCTGCTCGGTGCGCCCACCGGATCGGGGAAAACAGTGGGAGCAGAACTCGCAATATTCAGGGTGTTCCGAGAATATCCAAAGTACAAGGCTGTGTACATTGCACCACTAAAGGCTCTAGTCAGAGAAAGAATGGAAGATTGGAAAGTCAGAATAGAGCAGAAACTAGGGAGAAAAGTTGTTGAGTTAACGGGAGACGTGACTCCAGACATCAGAGCTATTGGAGAAGCCGACCTGATCGTAACGACACCCGAGAAGTGGGACGGCATTAGTCGGAGCTGGCAGACGAGAAGTTACGTTAAAGCTGTGGCTCTCATCGTCATCGACGAAATACATCTGCTAGGAAATGACAGAGGTCCAGTTCTAGAAGTTGTCGTTTCGAGAACAAACTTCATCTCGTCACACACGGAGAAACCTGTCCGTGTGGTGGGGCTGTCAACAGCTTTAGCCAATGCCAGGGATCTCGCTGATTGGCTGGGCATTAAACAGGTTGGATTGTTCAACTTCCGACCGTCTGTCCGTCCTGTTCCTCTTGAAGTACACATCGCAGGATTTCCTGGTCAGCATTACTGTCCTAGAATGGCCACGATGAATAAACCAACCTTTCAAGCGATAAAAACACACTCTCCAGAAAAGCCGGTGCTGATATTTGTGTCGTCACGGCGACAGACGCGATTGACAGCTCTGGATCTGATAGCCTACTTGGCTGCCGAGATGAACCCGAAACAGTGGCTGCACATGGAGGAGATGGAGGTAGGGGCCATTTAATTGTGTG

Transcript

ctg531-2.5-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF02889	Sec63	Sec63 Brl domain	Family	Interproscan
PF18149	Helicase_PWI	N-terminal helicase PWI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR004179	Domain	Sec63 domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR041094	Domain	Brr2, N-terminal helicase PWI domain	Interproscan
IPR050474	Family	Helicase Hel308/SKI2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47961	DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg531-2.5-1 global RNA-seq network