Gene detail

Detailed information of ctg488-3.17-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg488-3.17-1	3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN	chr10	7522234	7544650	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg488-3.17-1

GAAAAAGCTGGCTTAGAAGTTAATGTGCCTCGGGACTTTCATCACTTGTTAACAATGTGGACATGCTCGTTGTAGTTCATGTCATATGGATCAGCGTGTGTTATATTTGTAAATTTATTTTTAAGAAAAGTACAGCTGACAAAGCTGTTCAGGTTGTGACAGAAGTGGACTGTCACTGTTCAACTTCAGGTCTTGATGAACTCAAACTGAAAGTAAAACCGGACCACGTAAAAGAACGAACAAACAACAGGCCTACTTGTAATTTTTGCGATTTCAGTTCAAAGGAACAAGAATCTTGTCACTCCAGAACAAGAAATAATAATACAACAAAAAACAAGTCCTTCAGTGGATATAAATCTAACAAAAACAATAGTGCTCATCCAGTCAATCACAGTAAACCTGGCAGACAAAGTTGGCCCATGGCTATGTCAAGATCAAACCCCAAGACTGCCAAGTCTTTGAAAGAAATTCAGAAGAACAACTCTGATGTATCCCTATCGTGGCTGCTGAGTCTGCAGGAGAAACAGGGTGGCACGTCGGCACATCAGATGAACGACTGGCACGACAGACTGGAATCCGTTTGGTTTGACGACAGTATCAAGAGTAAGAGTCAGGTCATAAACTGGACGTCGGAAACTCTCAAACAATACTTCTCTACTGCATCCAACCCTTTTGCTTTGGCACTGTATCTCACACAGAGGTCACGTGATTATCTGACGAGCAAATCAAATACATTGTCGTATTTTATCCTAAAACAGTTTGACCAGTGGCTGAAGTCGCCAAACAATACAGTGAGAGGAACGGCGGATTCCATGCTGACTCATGGTTTCCGTTTCAGTGTCTTGCGAGTGGTGACCGCCCCACACACCACCCTGTTAGATCTGGCGGTCAAGGCGTTTAATCTCAACCACAGTGGAAACGAGTATTGTGTGCCAGTCGTCAAGGAACTGTTGGCCAACAAGAAGTACAACCAGGCTGCTCAATGTATCAGCAAGTTGCAGTTACAGTCCGAATTCACTATGGAGGAGATTGTGCTGCCACTGATCCTGCAAGACAAGGTAAACGTTGTGGAGGACTATCTGGCCGGGAATGCGGAGCAGCAGAAACTGGCCGTCAAGCTGCTTGACCACATGTGTGACCCACAGACAAACCTGCATCAACTAGTCGATTTATCTGGAGTAGAAAATGTAAAAATGCAAAAACTACAAAAGAAGACCCTTAGTAAGCTTGCTTGTCGATTGATGAAGTTGTTCCAGATACCATATGAGGTGTGTCCTAATATTTCTAATGCTCGAGGACTGGGAGCATTGAAGTATCTGATGTACAAGAAGTATATCGAGAAAAGTTTTGGGTCTGGAAGCTGGGATGAAATGATTCAGTCTGCCGTTGGGTCGAGTGCATATCTCCGGCAGCAGTTGGTGGAGCAGATCATGTGTTACAACGACCTCACTGAGGCCGCCAAGTGGGCCAACTACTACAACCTGGAGGATTCCTCCCTGCCAGTGCCGGTACGAGAAGCCAGGGCCAGACTCGCTCAACTGAAGCCTGATGAGCCGGTTCCGAGTCTGACATTCAATGAGGGCGATGAGAACTGGGATGACGAGTGTATTCCCCAGGAGGAGATGGACAAACACTACCACAGTCTGGCCGTCACGCTGGACCAGCCCGGCACTGTTATTGGGATTGATTCTGAATGGAGGCCTGCTTTTGCCAATACGCCTGCAAGAGTGGCATTGTTACAGATGGCGGTGAGAGACCACGTTTTTCTTATTGACTGTCACGTCCTCAGCTCTGTGATGGACTCGGAAGACTGGTCTCACTTCACCAGCAGCATCTTCTGTAACCAGTCTCTTCTCAAACTTGGATTTGGTTTTGAGGGAGACTTGAAGATGCTGGTGAACACATTTCCTAGCATGAAGGAACCTCTTCTTGAAATGAAACGAGTGATAAACATCGAAGATCTCACAAAACAGATGTTTGGTGATGGCCCGGTTATGTTGAATGAAAAGCTCTTGGAAGGAGATGAGGCTGTAGCAGGTCCGAGCTGTGTGGACAGGGACGATGTTGATGTGGATGACGACGATGATGACGAAGGTGCTATGGTGGCCAGACCGTTCAAGTTTCAGAAGAAAGAGGAGCGCGGTTTGAGTGAGCTGGTTCGTCGGTGTCTCGGGAAGCCGCTGTGTAAGATAGAACAGATGTCAGACTGGGAGAGGAGACCGCTCAGAACAGAACAACTTGTTTACGCAGCTCTAGATGCCTATGTTCTATTAGAAGTTTATGGTGTCCTCCTCAAGCACATTGATGCTAACCACCTTGACATTGACCCAGAGCCACTTCTATCTCACAAGTGGTGCAAACCAACACGCAACGACAAGAAAAAGGCCAAGGCAGCAGGAAAGAAACTTCCAAAACCTGAAACGACAGAGACGTCGTGGTGTGTGCCTCGCTCCGGTCCGCCGATGCGCCCAAACCAGCTGCGCGTGGTGGTTGACACGATGCTGCAAGGTCTTGGACGTCACCTCAGGAGTTGTGGTGTGGACGTGAGGATTCTCGAAAATAACGAAGACCACGAGAAAACCGTACAGATTTGTCGACAAGAGGGAAGACTTGTACTTAGTAGTGGTAAGCCCTTTGCTATGATACGTGCTCATATATTGCCAGAAATGTGTTACAACGTGCAGTCGGAAAAAGCGCGAGACCAAGCTGCTGAAGTATTACATCATTTCAATGTCACTGTCACACAGGAAGACATTTTCAGTCGCTGTCAGATTTGCAATGGCGACAACTACATCAAGATTCCAAGCCCTGATCTTAAACTTCTGTATCAGAGGCTGGATCAGCTGAAGAAGGGAAATAACTCTACTGAACAGAGTATTCCAGACAATGTGTCACGATTTCTCATCGATTACGGCATTGACTGGTCGTCTGTTCGTCTCGTCTCAAACGGCGTCTTGCTGCAGGTTGACGCCATGCCGAAGCCGATGTTTGACAAGGTTGACTTGTTCTTCTGTTGTGCCACGTGTGGGAAAGTGTTCTGGGAAGGAACCCACTTCACTCGAGTCTGTGATCAGTTCAAACATGTACTCGACGTAAACGATAAATCTAAAACTGTGTATAACAGTCACATGCAGGAAAAGTAACTTGACATTTTCTGTGTAAAACCTCTTCACTTCTTAACATTGGAAAATATTTTACTTAAATGTTTATTTTTGCACAACTTTTGTACTCATTATAAGTTCAGTCATCATTTTATCATTGGACAAAAATCATGTTGATTGTGTCCCACTGAAAGCATTATATTAAATGTGGACTTCTGAGACAAGTATAAAATAAATGTGTACTTAAAAACATGAAATACATCTTTGTTATGATGTACGTTTTTGCTTTTTGTTGTTCTGTTGTAGTTTTCTCCTGTCTCACAAGATTGAATGCAGTGTAATTTTTATAAAAAGTGTCACACTCAGACTGTGCATGTGAAATATGACTTAATTTTTGTCATCACTCACATGTAATATTACACTCACTTGTGTTAGGATTCATGTACACAAACATCCTGACACTCGTTTCATAAAAATCAGTACGACACACAACCTCGGGTTGTTTCCTATTCTTAGTATGTACATTACTTTTATCTGTGACATTCAGATGAAATTATAAGAGCAACTTCCTCTCCTCACATATCTTTAAAAAGATGGAAACAACTTTGCATTGGTTTCAGCATGGGCATCTAATGGAAAGTTTCCAGGGGAGGGTGGGGAGACATGTTGGCACATAATAAAGGTTAGGCGTAGTCGGGCAGAAGCAAGTGAACACTGGA

Transcript

ctg488-3.17-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01612	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan
PF01927	Mut7-C	Mut7-C RNAse domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002562	Domain	3'-5' exonuclease domain	Interproscan
IPR002782	Domain	Mut7-C RNAse domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR052408	Family	Exonuclease MUT-7-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47765	3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408	Molecular Function	3'-5' exonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg488-3.17-1 global RNA-seq network