Gene detail

Detailed information of ctg424-4.6-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg424-4.6-1	PLATELET-DERIVED GROWTH FACTOR	chr6	53287631	53301261	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg424-4.6-1

ACGCGTCACTGTGGAAGAAATCTTTGATAATATCCCCTTTCTGCAGACCTCCACGCGTCACTGTGGAAGAAATCTTTGATAATATCCCCTTTCTGCAGACCTCCTAACCTGCAATCCGATGCCGACGCCGCCTAGGCCGATATTTAATGGAACGCAATAGCCGAGTTGGAACATAATTTTATTCCCGAGACGAAGACAACACCATGAACACGAAAGCAGTTCACTTCTTGTTTGGCCTCATCGCAACAGAGGTGTGTATAATAAGTGGCCAGCTGAGTCTGATACAGACGTTACAGAATGCGAGGACGGCTGAAGAGTTTCTCCAACATGTTATGATCAACGGGCGACCAGCACGACTCAGTGACGTTTACATGGACACGTCTACGACTGATGAAAACGGGGAACAGGTTTACGTTAGTGGTGGTTTAACACTAGCTCGTCCTGACGAGTGCAGTCCACGATTGACGACCGTCACAATTCCAAGAGGACCCGGAGACCACAACGTCGTTTACTGGCCTAAGTGCACCCAGATTGAACGATGCGGTGGGTGCTGCGTATCGAACATGCTCAAGTGTTTCCCAACCAGAATCGAAACAGTGGAACTTCACGTCTTGAAAACAACGCTTCCCTTCCCTGGGGCACTGAATCTGGAGTGGGAAGGACCCATGCCAGTGGTTTTGGAACGTCACGTGGCCTGCAGCCCCATCTGTAGGACGACCCGAGAAGACTGCACCGCTTCCCAGACGTTCAACGAGATGGAATGTATGTGTCGCTGTAACCACCAGAGTCCCTGCTTTCCTCTTCAAACGTGGGACGAGGCCACCTGCTCCTGTAAATGTCGAACAGTTCTCAACTGTTCACCATCCACGTTCAATACGGAGACTTGCGAGTGTGAAATAAACAGAGGCAGCAACGACATCAGATACAGCAGCGATAATGGCGACATCACAGCAGAGGAAACGGCCAACTTTGACAATGACAACGCCCAACCTAGCACCACACAGAAACCAACCACAACCACAACCACGCAACAGTTCTACGACCCATGCCTAACGCTGGCATGTCCGCCACGTTTCGGCAAACGGGTTGCTCCTAGCAACCCGAATGAGTGCAGGTGTGTACCGCCATTCTTCTATCCGGGAAGAAAGTAACACTCCGATCAAACGCAACACTTTAAATATATATACACATGGCATTGTATATATGTTTGTAACTTTTTTTTATTTCAGTGAAAACAATTGTTACTGAAACGTGTCCATGAAAAACAAATCAAGTACAAAACAATTAAACTTGTGTAGAAGTTTTAGAATTGGTTACATGTACGCCCAAACTTTGAAACAACAACCCAGATGTAGTGTATGTATTGGACAGGGGTGTTATATACAAGTAAAATAAAGCATAAAATACACTGGGCGGGATTTATGGTGGCTGTTAGGGCAGGTGTCCGTTATATACAGGTGTTCGTTATATACAGGTGCCTGTTAGACAGTCTCGGCTGTGTGTATATATATATATATAAAATCAGAGGCTACCTGTAGTTTTCGTATACGTATATTGTTTGATACGTCTTACATAGATTATGAAATATCAGTGAAGTCGTTTATATGTTTAAATATATTTCACACTTTCCTCTAGCATAACGAGTCAGATATTAAACTTGACGAGCCATATTTGATTTAAAACACAGAACATTTTATTTGTTTAATTTCCGTGATTAAACTTTACTTTCAAAAACACCAGCAAACATATCATCAATATTAACCAATTTTAACTGGCCCTACTTGTTTTTTGAATGATATATTATAATACTGCGTAACACAGTAAAGGTATATTGAATAATAGTATTTCGCGGAGGGTCATGCCCCTCTCCCCCCCCCCCTCCCCCCAACACACAAACTTCAGAATATCCTTCCCACGGGCATGGTACATGACAACGATTGCATTATTGAATATACTGGGTTTTTTAAAGACTGCTGAATTTTTAGCAAATCAATCTTTGTTTTAATAAACCTGGTATAAATGTATTAAAGTTATTGTCTGTTGCAACTATATAGTTAGTTAACCTATAAAATACAAACTGCCGATTTGTCAGTGAACTTGGCGATAACATTGTATTATGGATGTATTTTTAATGAAATAAATGTGATCGAAATGTA

Transcript

ctg424-4.6-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00341	PDGF	PDGF/VEGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000072	Domain	PDGF/VEGF domain	Interproscan
IPR029034	Homologous_superfamily	Cystine-knot cytokine	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11633	PLATELET-DERIVED GROWTH FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0008083	Molecular Function	growth factor activity	Interproscan
GO:0008284	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0031954	Biological Process	positive regulation of protein autophosphorylation	Interproscan
GO:0070851	Molecular Function	growth factor receptor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg424-4.6-1 global RNA-seq network