Gene detail

Detailed information of ctg409-9.3-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg409-9.3-1	PRE-MRNA-SPLICING FACTOR ISY1	chr3	41171766	41185775	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg409-9.3-1

ATGACAGCCATTCTGCAGAACACCACGGTTGTTCGCGCACGTAACAGTGAAAAGGCCATGACAACGTTGGCTCGTTGGAGAGCAGCTCATTTAGATAATGTTAAAGAAAAGGAAAGACGTCCATATCTTGCAACTGATTGTGAGGATTTGCACCAATGTGAGAAGTGGAGACGACAGATTATTGGTGAAGTATCTCGCAAGGTGGCCCAGATTCAAAATGCTGGACTTGGAGAGTTTCGACTTCGAGATCTCAACGATGAAATCAACAAGTTGCTTCGAGAAAAGGGTCACTGGGAGGACAGAATCATTGAGCTTGGTGGTACAGATTACAAGAAAGTGGGACCCAAATTGCTGGACCATGAAGGGAAAGAAGTGCCAGGAAACAGAGGATACAAATATTTTGGTGCAGCTAAGGATTTGCCAGGAGTCAGAGAATTATTTGAACAAGAACCACCTCCTCAGGTGAGAAAGTCGAGGGCGGAACTAATGAAAGAAATAGATGCTGATTACTATGGTTACCGAGATGAGGATGATGGTCTTATAGTTCCTCATGAAGTGGAGGCAGAAAAGCAAGCAATATCCACACTGGTTTCCCAGTGGAAAGAACACCAGAAGAAGGTTGTGCGTGGTGAGGTAACCGAAGATGAAGACATGGAAACAGATGATGTTTTATACCAATCAGAAGAGGATGAAGACATTGGAGAGGAAAAGAAAGCGGAAAAAGAAACAGAGCAACATTTTATTGCCCACGTACCCGTTCCATCTCAAAAAGAGATTGAAGCAGCACTGGTGCACAGAAAGAAGATGGAACTGTTACAGATGTACGCTAGCGAAAGTTTGCAGGAAGAGGAGGAAGGAGTCCGACAGATGCTGGGAGTGTGACGGGGATGAAAACAGGAACACTTTCACTGACTGTGATACCATGACACGCAGACACTCAAATGAAATACAGGCATTACATTTGGATTCACTGACATTTAATGTCAATTGGGAGAAAAAAATGCCTTGAGGGACATCTAAAATCTCATCTGTAGGCCATGGAATGATGTCTGTCCCACTCTGAGAAAATGTTATTCAGAAACAGATCTAGAACTTGACTGATGTGGGTGGGGAAAGAGCTAGCTTCTTTTGGTTTTGACTGAAATGCAATATTCTTGAGTATTGTGGAAAGGTAGCTTTCCATACAAAACAAGCAATCACGTGCCATCCCATGCACCCCCCACACACACACCCCCAAAACAGTGCCTATTGTATTGTAGTATTGTACAGCTGATACTTGGTAAGTATAGTTTGAAGGGCATGTAGATGAATGTCTTATACAAGAAATAATTACCAATGAAAAGACATCTACACATATATGTAGAAGGAGCTGACTTCTTAAAACAGAGTTTTTCAAACCACAAAGGTGTGCAGAAGCCATCCAAGCACTGAATTGATGACTGTTGTACTAAGCTTGGATACTTCCAGTGCTGGCCCATGAAAAAACATCTCTGTAGCTGTTAAAGTACATCAAGATGTATGACTTGTATAACAACAAGAAGTAGGAGTATACAGGAAATATTTTGTTTTCAAAATCTTGATTAGCAATATTTCTAGTCAACTGAAAATGGATTATTATCAACTACTGTTTAATGTTTTAAAATTGTGTAGTGATCTGTAAAACTTGCGTAGCGAATCGTGACACAATACTGAAGAAAATGTTCCATGATGTACCAAGAAAAGTAGTCTACACATCTCCTGAATTGTTACAGTATCAGGTAATCAGAGTTACTGGAGGTTCAAGTGCATTTTATGCAATAAAATAATATGTTCAATGAAAGGATTAACATGGCATTTGGCAGTCAGTGTGCTTAACTTCTCAACTGCCGGGATATGCACATAAATTATCATTTCACCAGTTTATCAGTCATGTTAAATGCCATTTTTAAAACTGATCTTGTATATTTGATACATTTTCCTAACTAATGTATGTCATTTGGTGTTTGTTTTCACATTTGTGGTTCATAGTACATTGGAATTAAAATGTGAAATGTATGTTCATAACCATTCTTTAAAAGATGTAGGCATTCATTCATCAGTCATATTGTAATTATTTCAAGTATCTACCTGGCATCATGAATTTTTTGTATCAGAATATTTTCCTATATAATATCATTATCACACAGTGTAAATAAAACATGTATATATCAACTGTTACTTTTTCTTTCTTTGCT

Transcript

ctg409-9.3-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06246	Isy1	Isy1-like splicing family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009360	Family	Pre-mRNA-splicing factor Isy1	Interproscan
IPR029012	Homologous_superfamily	Helix hairpin bin domain superfamily	Interproscan
IPR037200	Homologous_superfamily	Pre-mRNA-splicing factor Isy1 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13021	PRE-MRNA-SPLICING FACTOR ISY1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000350	Biological Process	generation of catalytic spliceosome for second transesterification step	Interproscan
GO:0000389	Biological Process	mRNA 3'-splice site recognition	Interproscan
GO:0000974	Cellular Component	Prp19 complex	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0071014	Cellular Component	post-mRNA release spliceosomal complex	Interproscan
GO:0071020	Cellular Component	post-spliceosomal complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg409-9.3-1 global RNA-seq network