Gene detail

Detailed information of ctg404-8.12-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg404-8.12-1	TRANSCRIPTIONAL REGULATOR ATRX	chr6	37290190	37310659	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg404-8.12-1

ATGCGTGTTCTCTACCATGGGTACGAAATTAACAAAGACAAAGAAATAACCGAAACTGCAGTTAGGTTATGTGCTGATAAACGTCATGTACCAAGCGTCTATTGGCTAAATCTACAAGATGGAGGGCAAGAGCAGAAGTGGTTCAGCAAGAAGAAGAGTAAAGCTGCCAGCAGCTCCGATTCCGAGGAATTCTCAGATTTGGAAAATTCACTGAAACCAGCATCACCTTGTAACTCTGACAGTGAATCCATTCCAGAATTGCCTGAAGGTACGGTTATTGTGAACCCAGAACCCGTTCGTGAGAAGAGACCAAAGTTTCATGGTCCAGAATTTTCTAAAGTTTCATCAACTTTGGGAAACTTGGACGTGTTTAACTGTACGGCGTGCAATAGACAAGTTAATCCCAATGTGAAAGGAGCAGCAAAACGACATCCAGACCTTGGGGTTCTTATTTGCAAGAAATGCTACAGTTACTATAAAAGTGGTGAGATAGCCCAGGACAGTGATGGCCTTGACGAACAGTGCCGCTGGTGTTCAGAGGGAGGCAAACTCATGGGGTGTGATTACTGCCACAATGCTTTTTGTAAACAGTGTATACTACGAAATTTTGGACGAGCAGAACTGTCCAAAGTCAATGGTGATGATGACACCAAATGGAAGTGTTATATATGCGATAGTTCACAATTATTGAAATTAACTGCATTTTGTGATGACATGATGGACAAAATCGAAAAGCAGCGACAGTTGGAAAAAACAGCAGCAAATACACCAAAGTCAGAAAAGAGCTCTAAAAAGAATATGTCTTTGACAAATAGTAACTCTAAAATTAATTCAAAACCATCGCCATCAAATCAGACGCATGTAGTACCCAGTATTAAGATCATTCCTTCTTGTGTCGAGGATGTTGTGTGCAAGCTGACGGGAATATCGAAAACCTTTATAACAATGTTAGAAGTTATGAAAACAGATTTAGAAATCCCTTACAGCATGATGAGTCCATTTGATGTCAACAAGGTGGATAGGAAACGACTTAGATATGCTGGAATGTTGCAGAAAGGACTGGAAACCTATACCAGCTCCATAGATAGGATTTTGTCGGAACAGATTGAGTCAAATGATGCCAACAATTCCCAGAATGATGACATTGAAATTATTGAAACATCAGCAAAAACAAAACAAGTGAAAATGAATGGCTGTTTAGAAACTGACAGCAATGATAAGAGTGTTAGAGGTGAAAATGAGTCTTTAAAACTTACATTAACCCAGAAAAGGGGGAAAGGAAAAGAAACTATTTTTACTTCGTCCTTCAAAGAAAAGCAGAAATCTCCAACAAAAAATATACCAGCCATTGTTATAGGTGACAACACAGATGAAAGTGGTGACGATGAAGCGGATGATTTGCCGGTGACCATTGTTAGAGACGTTGGTAGTGTTGCGTCATCTGTCCCGACTCGTGATAATTTGGAGGACAAGATTGATCTCAGTCAGCAGAATGAAGTCGCTCAGTTGGAACTTCTTCAGGAACTTGCTGATGAACTAAGCAACGAGCAGCAGAGAGATAAATTGGCTGAAAGAAAGGACCAAGACGAAATGGTTGGAAAAGGAGGTACACCACAGAAGAATGCTATAAAGAAAATTCAGAACACCACCAAAAGTAGTAAGGACAGTGATGATTTGTTTGACATTAGTGACGATGATGTTGTTGAGGTTGATAATTTGAGAGATGAGGAAGATGTGCAGATAGACAGTGACAATGATGCAGACAAAACTGTAGAAGTGAATAAAAAAGGACATGTGGACGTTGAGACTAGTGCTCTTGATAAAAAGAAGGCAAAAAACCCCGACAAAGTTGAATCTGATGGAAGTGTAAGTGGAGGAAGTGGTACTAAGAGTATAAAACGAAAGGAATCCAACAAAACCAAAAGTGCCAAAAAACAAAAGGACACAAGTAGCGTGAATGAGGAAAGTGATTCGGAATGTGACATGAAAAAATCTAAAAAAGGTCAGAAAGAAAATAATAAGAAATCTTTGACTAAAAAACAAAGTAAAAGCAGTTCGGTTAAGGTGGATCGGAATGAATCTGAAGAGGACGTTTCCAGTTCAGACCTTCTCATGAGCTGTGATGATGATTTTGATGATGGTTCCCGAAAAACTAGAAACAGGAAAAATAAAAGACATAGCCAGAGAACCAAACGGACTGCTTCAGCTTCTGGTAGTGAAGATGAGTCAAAAAGTTTAAGTTTACGACGCCGTGGCAGAGGAAAAAAAGTAGAAGAAAAAAAGAAAACTACCAAGAAAAGGGGGAAATCACAGTCAAGTGATTATGATAGTGATGATGAATTGGACAAAGACATTGAACGTTTGTCACGTAAACCGAGACTGGGAAGAAAAGCTAAATCTGACCGTAATAAAAGCGAAACAACTGACAAGAAAGCTGGAAATTTGAAGGAAAAATCAAAAGGTTTGTCTGTTTTGATTATGTGATGTATGACTATTTTAGACAAGTATTTAAAAGATCCCAAGCAATGTAATGATTCATTTCGAAACTAAATTATTTAAAATAAAGCTGATCGTTCGTCAATAGATGAAATGTCTTATTACTCCACTTGGGAGAATTGCCATTATTAACCTTCTGGATACTGCAGGTGAGATATCTCACCTGACATCAAGCAAGTTGACATATTGTATACTGTATACAGCACATTCCCCAATTCATATTTCCTGCCATTTTGCACACGGCACTCACCGGAAATAATAATAGAACAACAGGAAATAGATAATTGAGAGTATGGCAGCTTTAGTGTTTAATTTTTCAAGGAAAATACCTGGGAATTTTTAGTTTAAAAAGTGTTTTTTGGCGAGTTTTTTCTCTTTACAACAATGGCAGAACATCGCAGTCAGGAATCGATAGCTAATAATATATTTTACCAACAGTGAAAATCACAGAATATTGGGATATGAATTGTAGTTGGTTTTCAAAAAAAACTTCTGGTCAGAAAAACAGTTATTGGGAATAATGGACATAAATACTGG

Transcript

ctg404-8.12-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17981	ADD_ATRX	Cysteine Rich ADD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR025766	Domain	ADD domain	Interproscan
IPR041430	Domain	ATRX, ADD domain	Interproscan
IPR052131	Family	ATRX domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46357	TRANSCRIPTIONAL REGULATOR ATRX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005721	Cellular Component	pericentric heterochromatin	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0031490	Molecular Function	chromatin DNA binding	Interproscan
GO:0035064	Molecular Function	methylated histone binding	Interproscan
GO:1901582	Biological Process	obsolete positive regulation of telomeric RNA transcription from RNA pol II promoter	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg404-8.12-1 global RNA-seq network