Gene detail

Detailed information of ctg32-5.3-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg32-5.3-1	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5	chr2	52785318	52836185	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg32-5.3-1

AAAATGGGCAAAAGCTAAAACCGCGAAGTTGAGATTGCAAAAGATGATGTCAAGAAAACGTGCACCGTTGAAAGATAACGATGTTTCCACTAATGTACAGACAGAAACATCGGCCAAGAAGCAAATGGTTAAAAAGTCGCCCTATGTTGAGGGCGCGATTGTTCGAATCCAGCTTCGTAATCTTTTAACCTACGACAATGTTGAATTTAACCCAGGACCATATCTGAATGTGATAATTGGACCGAATGGAACTGGAAAATCGACAATTGTTTGCGCTATTTGCCTTGGACTAGCGGGAAAGACAAGCTGGCTCGGTCGAGCTAGCCAGCCTTGTGATTTCATCAAATATGGATGTGATAAAGCCAAAATAGAATTAGAGTTACACAACCCCAATGGAGATAACTGGTTCGTACAGAGAGAAATCTCCAAGAACAATCAGTCAACCTGGACAGTCAACAAGAGACCCGCAACTCAAAAAGCTGTTGAAGAAATGGCAGCCCGTCTCAATATCCAAGTTGGAAATCTCTGTCAGTTTCTACCTCAAGAAAAAGTGGCAGATTTTGCTAAAATGACTCAGCAGGAGTTACTTGAAAATACTGAAAAAGCTATTGGTGCCCAAGATCTGTATGAGAACCACCAGAAGTTGAAGGACGCGAGAAGCAACGCACGGAGAATTGAAACCTCGGTGGACAGCCTGACGGCCAGGCTGGAGCAGGAGAAACAGAAAAACGTGCGCCTCGAACAAGACGTGAAAAACTACGAGGATCGCAGACATCATCTGGAGAAGATCAAGATCATGCAGATGAAGAGACCATGGCTGGAGTATGAAGAGAAACGAAAACAGTTTAATGCGGACAAACTTGAAAAGGAGGCGAAAGAAGAAGAATTTAAAAGGGCACAGGCGGAGAATCAGCCGATGAGAGACAAAATGGAAGAAGCGAGAGGCAAGAAGGAGTCGCTTGATGCTCACATTAAGAAAAAGTCAAATGCTATCCGTGAACATGCCAATAAAGTACGGGACTGCAGTGAGGAGTTGGAGAAACTAACTGACAAGATTTCCGAAGTACAAGATGAATTGAAATACAAACAACATGAAGAAGAACAGAGGAAAAAGAAGCTGAATGACTTGCATCATCAGTTAGCAGCACTTCAACAAGAACTTCAAGAAGTGGATGAGACTGAGGATGTCCAGCCAGCTCTGGACAAGTTATCTCAAGATATGCGTATAGTCAATCAAGATATGACTCACGTACAGCAGGAGGGAAACGTGACTCGGATTAGTAGGGACGCAATCCAACAAGACATGAATGAACACCAAGTAGCACTTAGACAAATCCAAGACATATCTAACAGACGGCTTGAATTGCTGCGGCAACGACACAAGCACACCTACGAAGCTGTCACGTGGCTGAGGCAGAATAAAAACAAATTCAAGAAAAACATTTACGAACCGATGCTCCTCTGTTTGAATGTAAAGAACCCTGATCATGCCAAATACATCGAGAGTCACATAAGCTTTAATGATATCCGTGCGTTTGTGTGCGAGGATCCCGACGACCTTGAACTCTTCATGTCGGTGATGCGTGACGAACAGAAGTTGAAGGTGAACATTGTGCGGAGTCCACAGCAAGCTCCAGACACTTTTAATCCATCAAAGAGCATCGAATATTACAGACAGTACGGCTTCAAGTACTTTCTACGAGACCTCATAGACTGCCCGGCCCCCATCATGAGTTTTCTCTGTGCCCAGTATCACGTGTTCGAGATTCCCGTCGGTGCCAAGCTGGTCGGCGGGAAAATCAACCAAGTGATTAAAGAGAATCCACACCTCCGAGTATTCTACACCGAAGATTGTCAGTACAATGTGAAGAAATCCAAGTATACTGGTGATATTTCTACAAGAAATACACAGCTCAGGAGGGCCCAACTGCTGTCTGTATCTGTCGATGTGACACGCCAGGAAGAACTACGGCAGCAAATCAGGGGGTGCTCGGAGAGGCAGCAGGAAGCAGAGAACCAGTACCGAGCCCTTCAGATGAGGAGTAAGGAACTGGAGGTCAGGATGAACCAGCTGAGAGAGACAAAGAAAAATCTAATGAAAAAGAAGGACCAGAAAAACCGTCTTCTGACACAAATGAATTCCAAAAAAGAAAGGTATACTCACAGCAAACACAAGAAATGTTTTGAACTCAGTAAGGAGAAGATTCGCCTGGCGTTACAACATGCCGAGTGTTTGCACGAGTTTCACAGTACGGAAATGTTACTGCGGGACCGGTCAGCCTCTCTGCAGACGTTAGAAAGACAGCTGCATGAGATGAAAGAAAAGTTACGGAACACGAGAGGGATTGCTAAAGGCTTGCTAGAGAAAGCCAAACAAGCAACAAACACAGCTCACGATGAAGAACTCTCAAAGGAGTACAAAATGGCGTTTGAGTGTTACCCGAGCAGTGTTGAAGAGATAGATGCAGCCATCCACGAACGACAAGCGCGAGCTGACTGTACATTCCAGTCTGATGAACGGGTGATCTGTGAGTACCGGAAGAGGAAGGAGGAGATTGCACGGCTGGAGGCGGAGCTGGAGAAGAAGATGGTTGACAAGACGAGCCACCAGGCGGAGATCGAGGACGCCAAACGGCAGTGGATGGAGCCGCTCCAGCAGAAGATTGCCCAGATCAACAACAACTTCGGATACTTCTTCACCTGCATGAAGTGCACGGGGGAGGTCGATCTCAACATTCCACCTAACCCGGAAGATTATGAAAAGTACGGTGTTCGGATTAAAGTGAAGTACCGCGATGGAGAGCAGCTAAGGGAGTTAACTCAGCACCATCAGAGCGGTGGAGAACGCAGTGTTGCCACGGTTCTCTATCTGATGGCCTTGCAGGAAATGGGGAAATCTCCTTTCAGATGTGTCGATGAGATAAACCAGGGGATGGACCCTATCAACGAGAGGAAAGTCTTTGAGCTGGTTGTGCAGACAGTTTGCAAGAAGAGCAATTCACAGTATTTCCTCCTCACACCCAAGCTCCTTCCAGACCTCGACTACGCTGACAACATGTCTGTACTCTGCATCTGCAACGGCCCGCAGATGATGGCTCACACGGAATGGAACCTCCGCAAGTTCCAGCGCCGTCGACAGCGGCTGTCGGAGGAAAATTGATAACCAGTGGACTTACACGTGTGTGTGTGTTGTTTTTATCAGTTTTATTTATGTGATGAATGGCTGTGTGGTATATAGATAGTGTTCTTCAGGCATAGTGTATACATGGTACACTCAAGGTATAGTGTGTGTGTGTGTACTATCAGTGTTCTCGCTGGGTGAAAATTAAAGGAGGGCGGACGTGCAGCACCACACCCTTCAAATTTTTTTTTTACAAAAATGGGGGGGGAGCTTGGTGGTTACCATGTCGTTGTGTGTTGATAGACTTTGTGGAAAGACATGCTCCTTATTTTGATTACAAAAAGTTTATACGAAATACAAGCAGACTCGTCTTTTAACTGAACCAAAGATGTTATCGGTCTGATATTCACTGGCAGTTCCGGTTTTGCTCAAACCGATCAAAGTTTTAATATTATTATTTTAATAAAGATTTCAAGATATACGAAAAACAAAAAAGACATTTGTGTGATCCCTTAATGTCGAAAACATTTTTTGTTATTCCCATCTTCATTGAATGAATCGATCACTGTTATAAAATATTATCGCCAACTGATAAAAAGTAGTTTCGTTTTTGTAGTGGCAGTGTATATATTATTTGGCACCCAAGATGAATGATTTTAATGCCAAACACTACCACTTCCGTTGATTTTATAAGCAGTGATATCCCCCCAAAATGAAAAATTTACAATATGTTATAAGAACTGCTGAATAAACAGAATGACAGAAAGTAAAAATCGTCAGTTACAATCAATTATATCTGTAACTGAGAACAAAATATCAGACGACAGTTAGTGGAAACAAAAGATAGAGTTACCATTCTGATCACGTGACAAATTTGGCGCCAAATAAGTGGGGGTTTTCCAGTCGGAGATTGCCGAATCCATAAAAAAAATTAAAATGTTTTCATTGCTCAAATAAAATATAACTTTTATTGTTTGTATTAAACATACAAATGGATACAGGTGTAGGACAAAATAGAGGCTGTTAAAAATACTATTAAATTATGTTACGGTAACCGTCGTAAATGTTTCGTCAGTTGCTTTTTCGTACACAACGCGGCTTGTTTCCTTTGATGTCCAGTGGGCAGACCAGGGCTCACCCTGGATCAAAAATACCTGTAGCCAAAATATTAGCCAAATGGAATTTTTATTAGCCATATTGAAAATGACGTGGCGTGACGTATATTCGCACTGAGAGCTGTCCTCAGTTCAGCCAAAGAACGTTCTTCCAAACGTTCGCGAACTATTTGATTGGTGTTCGTCGTGTCCATTTGGTTTAACGTGAAGCACACAAACCAGTCTAGCGAATGTTCGGTCTGGCTGAACTCGGCCCTGAACTGGCATGTGTATTCAAATTGATACATTGTCGGTCTGTTTTTATTACTTTGGTTCAAAGATTTTACAAAGTAAAAATAACAAGTTACAGATCTTCCAGACATTGCTGTCATACATATTGAATGCATGCCGTTAAAATTAATAACCGTGATTATTAACATAAGAAAACATTATAAGGCCAACGCTGTATTCTGCATGACACCGTTTCTCGTTACCGGTCGCGAGATGGCTATTACGCTAATTGAATATTTGGTAGTATTATTATGTTTGAGGTGTCGGATAGATTATGTAACCGTTTGTTCACATCAGAAGACAGAAAATGGCTTAGCCAAAATTTTAGTCACTTGCAAATTTTATTAGCCATTTGTTTTAAAAATTAGCCAATGGCTGATTTGGCTACCGACAGCGCGAGCCCTGGCAGACTGATCGTTGTGGTTTTTTATGTGTGGAAAAAAGTGTGCATTTGATAATAGCGGAGATAGGTGCTGGAAAATATAGTAGGGTGCTGGAAAATAAAGAGGGGCACAGAAAAATAAAGGAGGGCGAGAACGTG

Transcript

ctg32-5.3-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13476	AAA_23	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027131	Family	Structural maintenance of chromosomes protein 5	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038729	Domain	Rad50/SbcC-type AAA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45916	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030915	Cellular Component	Smc5-Smc6 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg32-5.3-1 global RNA-seq network