Gene detail

Detailed information of ctg3174-0.3-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg3174-0.3-1	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	chr14	51118804	51124004	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg3174-0.3-1

ATGCGGCCAAATGAGATGTGGGCTACTCATCTGAGTGTTTTGTTGAAAGGTAGAGCTTTAGATGTTTATGCATCGATGCCAAGTGAACAAGCTCTTAACTATAACAATTTGAAAGAAGCATTACTTAAAAGATATGACTTGACGGAAGATGGCTTTAGGCTGAAATTCAGAACTGGAAAACCTGAGACAGGTGAGACTTTCCAACAGTTTTCAGTTAGGTTAGCAAGTTATTTGAGAAGATGGTTAGAGATGTCCAAGACTGAGCATACTTTTAAAGCCTTGTTTGATGTCATAATGCGTGATCAGTTTGTACAAATTTGTAACAGAGAACTAGCTTTATTTCTGAAGGAAAGAACACCTACAACAATAGATGAGATGGCTGTTTTGGCGGATCAATTTCGTGAGGCAAGATTTACTCGAGCAGTGAATTTAACAAAAGGTTTGGGAATTCAGTTTAGCCAGAACATTCCAGAAAGGAAAAGCAAAGAAGGTAATGGAACAACTAAAATATCGAAACCGGATGTTTCAGGTTCGTTCTCTAATAAACGTTGCTTTAGATGTGGTAAACTTGGTCATATTGCTACTCGTTGTTATCAAAAAGTACAACAATCCAAGGTAGGTTGCATGACATCAGAACGGGAATTGGTTTCTAGAGAACGATCAGCTGGTGAAATCGGTATTAGAACTGAACAAGGAATGAAGGATAACGGTTACAAAAATGCAGGTACAATACCAAAGGTTTGTGGAACTTGTGTATCATACACCACAACTGTGACAACAGCTTCAACATCAAGTGAGTGCATTCTTAGTACATCGTGTGATTTAAAAACTGAAGTGTTGAGTATGCCTACAGCGAAAGGTTGGTTAGGTGGTGAAGTTGTCAGTGTGTTGCGAGATACTGGATGCAATGGTGTAGTTGTGAGACGATGCTACATTCCTGATGAACAGCTAACTGGTGAGGTTCAAATCTGTATGTTAGCAGATGGATCAAAAGTGGAAGCACCCATAGCAAAAGTGCAAATCGACACACCATATTATACAGGTGAAGTAAAGGCTTGGTGTCTAGAACATCCACTTTATGATTTGATACTTGGCAATATTAAAAATGTCAGGGAGCCAAATCATCCTAATCCAGACTGGAAGCTTATTCAGGCAGTACAAACACGACAGCAGAAACATGACGCAGATTCGCCAGGGTATACCAGTTTGGCAATTCATGATATCAGACTGTTATCAGATACTCCAGTTAGAGTTAAACCCCATCCTTTGCCTTTTGCAATGCGTGACGTGGTCGATGATGAGGTGTTGAAAGAGCTGCTGATTAGGTTAAGAAATGCAAATCTGACTGCAAAGCCAAGTAAGTGCTACATTGGTTTTCAAAGTTTGGAATGTCTAGGACACATAGTGGGAAATGAAAAGCTGGAACCAGTGCTAGATAAGGTCAAAGCTATTAAAGAGGCTAAACAACCGGAGACAAAGAAACAGACCGATGCTTCGGAGAATGGAATTGGGGCAGTTTTGTCACAAATGGATGAGGGTATAAAAATGCCAATAGCTTATGCTAGTCGAAAGTACAAGAAAGCAGAAACTCACTATGCCACAGTTGAGAAAGAATGTTTAGCTATTGTGTGGGCTATACAGAAATTTCAAAGGTGTATTATTGTGAGCTGGGGTGATGATGGGTTACCAGCAGCTTGTTGCGTCACCGTGGGGACTGATACCGATGGCCTCGTTGATAGTGGAAGAGTGACGGTCGGATTTAATGAGTTGGGGTGATAATGGTTACCAGCAGCAGATGGCCTTATTTATGGAACAGGGTGACGGCGAGTCGAGGGTTGCAAGAACAAAGCAAACACTGTCGATGAACTTGACCTGGACTTGGTTACACGTATTTGAAAGGGGTCTCTGTTCCAGAGACTGATAATTTACTGGTGCTTGGTGCCTGGGTGTTATTATATATGAACAGTATTACCTTATTTCCAGTGAATTGTTTATAAACCACCACTA

Transcript

ctg3174-0.3-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02023	SCAN	SCAN domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR003309	Domain	SCAN domain	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR038269	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46888	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg3174-0.3-1 global RNA-seq network