Gene detail

Detailed information of ctg314-4.1-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg314-4.1-1	NOTCH LIGAND FAMILY MEMBER	chr10	84331059	84362624	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg314-4.1-1

ATGCTGCTACATAAGATCAATGTCTATAAAGTGAATAATTCCAGGAACACGTTGTACCTTACAGCTGTTGACGAATGCCAGCACAACTCACCGTGTAACGGACACACCTGTATAAACCTGCCAGGTAGCTACAGGTGTGAATGTCAGGATGGGTATTCCGGTTCAGACTGCTCAATTCCTCCGGATTTTTGTGCAAACAACAAATGTGAAAAGGGAAAGTGTGAAAACAGAACGAACGACTACATCTGTGAGTGCCAAGACGGATTTAAAGGCCAGTTTTGTGAAGAGCAAATAGTAAACGGCGAATGGAATAACTGGACTGACTGGGATGTGTGTTCTCTGACTTGTGGAGGTGGAACACAGTCGAGAAGAAGATGTGATAACCCAGCACCAACTCATCCTGAAGGAAAGAACTGCAGTGGTTCCGATTCTCAGACACGCGAGTGTAACACAGACGAGTGTCCAGGTTCGTATTCAGGATTGTACTGCACACCAGGAACCTACAGCCATGACGAAGAATGCACGTTTTGTGAAGTGGGAACCTACCAGGATGAAATAGGAAAACATGAATGTAAACCATGTCCATCTGGGACGTCAACTCAGTTCACTGGATCGAATGCTGTTGATGACTGTACAGCTCTTTGTAAACAGTTTCTGATAAAAACGCAAAAGCCTTCATACCTCATCCTGTATCCAGGCTGTTTTGTCAGCGAATATCGCCAGGTTGGTACAGACCATATAGCATCAGACGATAAATCCATTTTTGTGAATTCTCCTCCAACACAAACAGCGTCTAAACGATACACGGACTCAGAAGCAATCGTCAAGAAACCGAGATATTCTCTCGATGTGCTGTCTCCAGCAAACAATGTGAACCTGACTGATGTGGTGATCAACGTTTTTCAAGTCAAAGCGAAAGATAAAGATGAAGTTGAAGATGAATCAGATGGTGTCGATATAGTGGTAGACGACAACACGGGACTCAAACGTGAACTTCAGATACTTTCTGATGCTCAAGGTAATGGCATGTCTGACGTCGACTTCAACGTCTCACAGCTTGCAGGACATGAAGAAGGAAGAACTAATCTGAGGACACTGCGGAGTGGAAGATCTATAGACAAGAAAATGAAACGTCATCTCGAAATACTTGCTAATGCAGAGGGTAATGGTATGTCTAACGTGGATTTCACTGTGACACAAACCTCTAGGAATGGTGACAACAACCTAAAACATCCTACAGTCAAACGATCTACAGACCTAGATATAGTCAATAAGAAAATTAGAGATGGCTTGGCTATACTTGCTGGTGCAAAAGGTAATGGCATGTATCGTGTGGATTTCAATCTGTTGCAGGTCATTTTGGATGATCACAACACATCCAGTTCGAGAAAGGCTGCATCTGTATCAATACCAGTTAAACGATCTACAGACGTCGATATAGACAACAAGAAAACTAAACGTCACCTCAAGATACTTTCTAAAGGTAAAGGTAATGGATTGTCTGACGTCGATTTCAAAGTTTCACAGGTTTCTGCAGATGAAGAAGGGGATGCTAATTTAAAAACACCTTCTCTAAAGAGAGCGATCAATAAAAGAGATGCAAACAAGCACACGGAGCGTGACTTTAAGATTCTCACCAATGCAAAAGGTGATGGGATGTCCAATGTTACCTTCAATGTGTCACAAACCTCGGGGGCTGATGAAAAGAAACTCAATTTGCGAAGAGCTCCAAGGCAGCCACTGCTTAAACTATCTACAGGTTCAGCAGATAAAGATGACATGAAAAGAAAACGTGAACTTCAGATCCTTGCTGATGCTGAAGGTAATGGTATGTTTTATGTGGACTTCAAGGTGTCACTGGTCAAACCTAATATGGAAGGGTATCCTCTTCTGCAAGAAACAAATAACCGAACAGTAGACTTGAATACAGTCAGCATGAAAACTAAACGTAATCTAGAAATACTTTCTAAAGCTGAAGGTAATGGCATGTCTGATGTTGATTTCAGCGTGTCACAGGTGGAATCCGATTTGGAAAATCCGCGTCCAAAGCAGACACTGACGGCAAGATCTACAGACTTAGATATAGTCAAGAATAAAATGAAACGTCATCTGAAGCTCCTCTCTGACGCTGAAGTATATCACAGTCCTAAAGGCGCCGACATCGGTAATATGACGTCATTACGATTGGAACAAATTAGTTTGACGTCACGCATTTCAACTAAATCTTTGAAAACTTTACGCTCAGAAGGAACACTGGAGATGAAATGGATGGTTGGTAATATGATGGGCATTGTGATGGAGGAGCCAGAGGAAGAAGAAGGAGAATCCCATAAATTGTGA

Transcript

ctg314-4.1-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF07699	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR011641	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR050906	Family	Notch signaling pathway	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg314-4.1-1 global RNA-seq network