Gene detail

Detailed information of ctg261-5.4-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg261-5.4-1	MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED	chr11	20170913	20180871	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg261-5.4-1

ATGCCATCAGAGACGGATCCCGGCATCGGAACAACTGGCTCAGTTCGAAGCAAACTGGCAGAACTCTCCTCGGGCCTTGAGAATGCTGAGGTGCCGAAGCGACTGTCAGCAATCGAAGGCAAAATCGGGGCCACCTGCTCTGCGGACGAAGCAGTGGACCTATGCACAACGGAGTGCATGTGCTCGGTAACCGATGAAGTCGTCAAAACCGGTGTCGCGACGACTCCACCCTGCCCCCCTTCTGTTTGTAAAGGTAACCGTAACGACAATGGCGACGCCCGCGACGAAGCCACACAAACAGAAGAAGGCGCCGTCACTAACGAAGACGGCTCACGTACCACGACAATCCAGCACAAGTTGGCAGAAATGAAGGCAGACATTGCTGTCGGGCGAGCGTTTGTTGACCGGTGTCTTGAGTTACATAACAGTAAAAAGCTGGACGCTTCCACAGCTTCCATAGCCAAAATGTGGGTGTCTGAGATTCAACAGAAGATTGCGTCGCAGTGCGTACAGCTGCACGGGGGGTGGGGCTACATGTGGGAGTACCCCATCGCCAAGGCGTTCGTCGACGCCCGTGTTCAACCGATTTATGGAGGCAGCAACGAAATCATGAAGGAACTCATAGCGAGGCAGATTATTTCAGACAAGTGATAAGGATGTACTCGTTGAAAGATTTTATGTGCAGTTGTTTTGGAAGTGGCTTGTTCTTCTGGAGGGAAATTTCATAATAATTGTTGTGTATCTGAGGTTTGGAACTATATTGTATCGTTATGTTTAATTGTAAAAGTGTTTTATGTTAATTGAATAAGGCTCACTTTCTTGTAAATTGATTTTGCTTGCACGTTTATCGATATGCTTTTAAAGACAGTACCTTTTCATATATATGATTCTGAATATGTTTCATACATGATTCTGAATGTTTGACATTTAGACCAGTACATTGTCGATATGTTTAATTATAAAAGTGTTTTATGTTAATTGAATAGGCCAACTTTTTAGTAACGTGATTTCGTGAGTGTTTTTGCTTGCACGTTTATCTAGGAATACAATGTATTTAAACACGGTACCTTTTTCATATACATGATTCTGTACAGGCATTCAACGGGCTACAAAATAGTTGCATACGTTTTTCAGTGTCGTGACGTCATAACGCAAAGTATGGACATGAAAATGCAGATGTAGGAAAGCACATTTGTCTGCTAGGAAGCATGGCTGATAAATCTCGTGCAGAACCACGTTACTGGAAAGCTGGCCAAAATACAGAAGCCAAATAAACTAAACAATTGTGAAGTAAATTCAGTAAGATACTGATTTGTAGAATACTATGTTGTGCCTAAGACGTAATGGGTCGCAGGACCGATTACACTCAACAGATGATGATTTTCTTCCCATACCAAACAGTAGACCATCACAGGTGCATTTTCCTGTCTTAAGGGAGAGTGCCATTAAAAGATTCCAAGCTGCATTAAAGGGACACACCAAAACGTTACAAACCAAGTCTTACGATATCTGGAGAGGGGATACAACCAGGACAGAACAGTTGGAACATGTCCAGGAGAGGTGAAACGAACGTACCCCAAGTCTGTGAAATTTGTCGTGACGTAGGCATTGTTGTGCTTTGAGCGACATCTACCAGTGACATCAGAATACTAACTTTCAAAATTATTTCAAGCAATTGGGACATGGGGATTCCCATGGTATTTATCGATATAAAACCTGCTTTTTCACTCCATTTGATAAAAACGATTAACCAAATTATAATTTATTACCACCATCATTCACCAGAATCATCAACACTCTTTGTCAGGGTCACTCAGATCACCTTCGCCGTTCGTCAAAATCATTGACACCGTCGTCACGGTCATTCACTGATCATCTTCTCTGTTCACCATTATCAACACCGCCATTCACCAGACTCACTCTTCGCCAACTCCCAGAATACATCATCTACGTTCGTCATCACCAGGACCCAATACACAAATACACTGAAATACAATATACCCTAATCAAAACCATGTAATATTAATATTACCATATCAGATGTTAGACAGTTTTCTCTTAATATAATGTCCACACTTCACAAGTGTCTTAAATATTACATAAATCAGATTTACCTAATACTTTTGTTTTGCAATGACGTTACATACAACTACTAACACATATACACAATAGTATACCACAGTTATACAACAAACAAATAAAATCTACTTACGGTTGTCATCAACCCAGAGTTATACAGAATAAAATATTTCACAATATCTTAACACACAGTTTCTCTCTCAAGAACGTTATGTGACTGCCCACAACTCATTACATCTCCCAACTATATCCCCACTATGCATGCCTTTACTCACAAACAAAAGTGTTCACCAACAAAAGTGTTCACCAATGTAAGCCCAAGCCCAAGTTCTTTACAAACACCTTTGCTAGTGATTACAGTATACAAATATAGTTTGCCTTAGCAAGCTATGACACACAGTTCAACAATAATTCGCAATTACCCAAGTATTTACAATAAATGTTCTAAAATATAATATGGTTCTTATATTAGTACCCTTGATTTGTGACAATCATTAACTTTAAAATAAACACTCAGGGACATTGAAGTGATGATAGTTGTATGGGTCTAACTCTGTAATGGAGGTTTCATGAGCTTGCTCCTCTGAGAAGATTTTGAATTTCAGGTATTCAAATTATACACAATGTTGAGTTGAGCCAATTTTGATTTATTAATTATTTTTTTTAAATATAAATATTATTCTTTGGACAAAATGTATTTTTAAAAAAATGAAATCAAATAATTTAATTTACAAGTAGAAGAATTTGGATTTTTATTGGGAATTTTGTGTGTGTGACTGACATGTTAAGCATGTGATGTCATTTTTAATATATACATGTTTTTTATAACATACGTGACATAGAGTTTTTTGTCTACTTTTTATTTTTACCCAGAATATTTTATGAAGCCACTGTTTATGATAAATGATGGGACATTACAATTTTGACATCCTTGAGTTAAAATTATGTATTATTAATTTCTACTTATAGACAAATAAATATGGCAACTGCAACTATTATAATGCATTTTTACACTTGACTATATATAGTATCAGTATGATGTTTATATAATATTATATACATGTATTGTTGTACAATTTACAGGAGATAGATAAACACTGTATGATATCTGTGAAATATTTTTGTATGAATAAATAATCAGTACTATTCTA

Transcript

ctg261-5.4-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006089	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR009075	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR036250	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR050741	Family	Acyl-CoA dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48083	MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003995	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0004466	Molecular Function	long-chain fatty acyl-CoA dehydrogenase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016401	Molecular Function	palmitoyl-CoA oxidase activity	Interproscan
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0019254	Biological Process	carnitine metabolic process, CoA-linked	Interproscan
GO:0033539	Biological Process	fatty acid beta-oxidation using acyl-CoA dehydrogenase	Interproscan
GO:0042758	Biological Process	long-chain fatty acid catabolic process	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg261-5.4-1 global RNA-seq network