Gene detail

Detailed information of ctg239-2.3-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg239-2.3-1	RBM25 PROTEIN	chr4	96581563	96612140	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg239-2.3-1

CAAAAGTGGGTTAAATGTTATTTCTTTCAGCATTTTTTTCGCTTTTAATGTGAAAATTTCGTATATTTATTAGATTTTCATTTTAATTCACCATAATGTCTTTTCCACCTCGTCATCCAATGGGTATGCCTCCAATGGGCCCAGGAATGGGTTATGCCTTTACACCAATGGGTATGATGCCAATGGGCATGGGCATGATGGCACCACCACCACAGATGATGCGTCCTATGATGCAAGCAGCAGCACCAGCAAAACCAGTTAAGAAGCTTGTGCCTCAAGAAATTCAGAAGGATGAAAAGAAAGAGGACAAGCCACCAGTGACCACAGTATTTGTTGGTAATATCAGTGAAAAGGCTCCTGATATGATGATAAAACAAATGCTTCAGAGATGTGGAAATGTACTAAGTTGGAAAAGAGTGCAAGGTGCTTCTGGAAAGTTACAGGCTTTTGGATTCTGTGAATATGAATACCCTGAGGCGACCTTGAGGTGCATCAGATTGTTAAATGAATGGAATATTTGTGAAAAGAAACTTGTGGTAAAAGTTGATGCCAAAACTAAAACACTTCTGGATGAGTACAAGTCGACAAAAGACGATGACGATAAAGAAACGGAAAAACCCACAGAGGAATCTACTTCCAAAGAAAAAACTGAAACGGACACTGAAGACAAAGAAAAAGAGAAAGAGAAAGAAAAGGATGAAAAGGAAAATGGAGCAGACTCTGCCGACAAGGAGGAAGTGGATGAGATGAGTCAGCGTGAAGATCGCGTGGCTAGAGCTGGTCTCGAGGCCATCATGCGAGAGTATGCCATGGAGCTAAACAAGCCAGGAGTCAGTGAGCAAGAATCTAAGGAAAAGCCCCCTATTCCTAAAAAGAAAATGATGGAAGAAAGTAGCCTTAAAGATCAGGGTCTTGATGATTTAGAGATGGAAGAGGACAAAAAACATTTAATTAACCGGGAAATCCGTTTCTTTAGAGACCGACACAAGGGAGAGGAGGAAAAAGAAGAAACTCTTGAAGAGAAAGAAAGACGATATGAAGAGAAAAGGAGAAGACAGGAGCAGTTGAAGGAGCGAGAGCGCCTGCGAGAGAGAGACAAAGCCATAATGCGTGAAAGAACGAAGACTAGGCGGAGGGAACGAGAGACAGAAGAGGAGGAGGAAGCATACGAGAGACGAAAGGCAGAGAAAAAATTACGAGAAAAAGAGGCAGCATATAAAGAGCGTCTAAATAATTGGGAAGCTCGTGAAAGGAAAAAATCTAGAGAATATGACAAAGAAAAGGACCGAGAAGAAGAGAGAAAACAGGATGAGCAAAGAGAAGCCAGGCGATTGAAAGAATTCCTTGAAGATTATGATGATCTTAGAGATGATCCTAAATATTTCAAAGGCAGTGCTTTAGCTAGAAGATTGAAAGAGCGTGAAAAGGAGAAGGAAGCAGATTCAAGAGACCGGCAGAGAGAAAAGGAAGAATTTGAAGAGCTGAAGCGGAAGTTATTGGAAGAAGGTCATCCTGACCCTGAAGCAGAGCTAGCTAGAGTGCGCAAGATGGAGAAGGAAAAAGAGGAACACTTACGTCCGAAGTTTATTCTGCCCGAGCCTGAGCCTGTTGTAATACAGCCCGTTGTAGAACCGCCGAAGGAAGAGTCATCCGAGGAGGAAGAGGAGGAGCTTCCAAAACAGTTGTCTAAAATGCAACCCACCCTCAAACCTGTTCAGAGTAACAGTCCGTCAAACCACTCATCCCCGTCCACAGATGGAGGGGAATCCAGCAGGAGTCTGCCTGGGGTGGAGACCGCAGAGCCAGTCAGTCAGCAGGTGGTCATCGGACCAGCCTTGAAGGAAGAGTCTACCAAAATAGGATTCAATTCCATTAAGTTTGGAACATCCACTAACAGTCCTAATGAGGTGCCTGGGCCGAAGCGGAAGAAGTACACAGTTGGTGATGTGTTTAACCAAGACGATGATGACTCATCAGAGAGTAAGAAGAGAAAACTAATTCCACTGGACTATGACGAAAAGAAATTGTCGGAAAAGAAAGCCACTACTGCGGAAGAGAAACGTATGAAAATTAAAAACCTCATTGAAGGCATTCCAACAGCAAAAGAAGAATTGTTCCAGTTTCCATTGGATTGGTCAATAGTAGATCAGTCTTTAATGGACAAACGAATCAAACCATGGGTTATCAAAAAGATTGTCGAGTACATTGGAGAAGAAGAACCAGCTCTCACAGAGTTTATCTGCCAAAAGGTTGCAGCCCGCAGTTCACCACAGAGTATTCTCAACGATCTCGTCAGGGTTATCGATGATGCCGCTGAAGTGTTTGTAGTGAAAATGTGGAGACTGCTGGTATATGAAACGGAAGCTAAAAAATTAGGACTTGTGAAATGAACATTTTGTGTACTTGTAGCATGTGTGTGTGTGTATGTCTGAATGGAAGAATGTTTTTGAAGAAATTGTGATGTTAAATTTACACAGGTGAGAGTTTACAGTCTGAAAGTCCATTCTGGTGAACATTGTGTATGAATGTTGGATGTTGTATTATAGTTGTTAATGAGAGGTTTGATGAATGGTTGTAAGAATATATCACCGATTGTAGAAATTAGGGTAGGTTTTTTTAAATACAAAAAATATTGCTGCCCAGTCCTAAAAACCGATTGTGCGTAAAGTGATTATAACCTTCCCATTTAAACTGATTTCACATGTTATGTACTAATTAAAAACAGAAAACAGTCTATTGTGGTTATTATAAATATATTGTATTATTTAAATCAATGCTTTTTAAACCTGCGTCCTAAAAGTCGGTACTTGATTTATGAAATTCCAAGGTATGTACATGTTTTGTGTTGGCTGCTATGATTGAGGTATCTATTTGAAATGATTAAGAGTTGTTCCAGAATTGTTCACAGCGGGACTATTTGTGTGGGTGTACCCCTACCCAAATTTTTTTTTATTCAAACTAAGCATGTATAGACAGAGAAATAGCAGCATAGCAGACTAGGCATAAAAACAATTATAGTGTGTCTCATCTCCCCCATGCGATTCATTCTGGACCAGTCTTTTTAACAAATGTTGAATAGGATGTATGGTTTCAAAAATACCTCTTTTTAATGTTTCTTTGTGAACATCAACAAGTTCTTTTGTACATATATTACCAAAAACCTCTGTATTGACATTGTGATGGTTTATGTTAAACAGAATAGAAACATTTTGTGGGGTGGGTGTTTTTGGCAGGGTATTTTGTAATATCACTGAAGAGTAAAATTATGCTGGTGCTACTTGAAGATAAATATAGCTCATCAGTTTACTAATAGAGGTAATAAAATGTTAGTATTACACTAGCAGGGTTTAATTTCTTTTTGTCTTTGGTACTAAAGTAGCTTAGTTACCACAGACATTTTGGTCATGGTATGTCATAAAATTATGTATAAATATTGAACAAAAATGATGGGCAACGTTTAGGAAAAATAAAATACAGTATTACTATGTTTGATACCATTGGAATTTCTCAAAAACTTGTGGAATTTCTGTAGGTTTTGCTTGTCTATTTTCATGTAACCTTTTATGTTTTTTTTTTTTATTAAACCTGCAGTGACACAATAATTTGTAGTGGACAACAGCTATTTTCTGTGTTTGAATGTAAGGACAATTCTCTCAGATTAAAGGTATGTTGTTGCTACACTAAAGAACTAGCAAGTATTCACTGGTGACTATCAGAAACTGACGTCGGTGTTCACCAGCAGTGATATTATTTGGTAATGGTGTCAATTTTACTGAGATTGACAAATGGAAACGTCATTTCAGCTACCAATTCTCTAACAAGTAGTCAACCATTGACTGTTGGCTATAGTGTAATGTCTCATTTTCTCTTCAGTTTATAAACCACAGAACTATTATTCTGTCGATTCATGTGTTTTTATAGGTTTTGTATACTGTGGTTTTACTTCATGTTAGAATTCTGTGGGTAACAAAAACTATGAATTCATGTAATAACTTATTCAAAGACTTCATTTTAGCTGAAATTTGAATCAAAAACATCATTTAAGCTTTAAATTTGTGTATTCAACTTTGAGGAAATTAAGAAATTTAAATGCTAGCCAATCAAATTTCTTATTTTTTTCACGTGATAATCACAGAAAACAAGAAAAATCATATTAGTTTTGTTCCACTTATTTACACTTGACGTGTTGAACCATTTATTATGTTTGAATACATGTCTTGTTCTGAGGGAGCAATAAATATGTATATATGTAAATATAATATTGTTGTCATTAGTTCTGTTGATCTATATATATGTATTAGTCATATACCAGTCCAACCAGAGGGGACTATAGGTTTCAACTTCGTGCATCTGTCTGTCCCACATAAATTTCTGGAATTGTTTTCAAAAGAAAAAAAAATTCTAAAGGTGAAATTTTGTATATAGCTTTTTCATATACTGTTGTATACCACAACTGGTATATCAAAGGCCTTGGTATGTGCTGTTCTGTCTGGGATGGTGCATATAAAAGATCCCTTGCTACTAATGGGGGAAAATGTTGCGGGTTTCCTTTCCAAGACTGTCAAACTTGCCAGATGTTTTACATCCAGTAGTCAATGAGTATTAAATCAGTGTGCTCTAGTGGTGTCTTTAAACAAATCAAACTCTTAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATGAAACATCTGGAATCAAATTCACAAAGCGATTTAACTTAATGTTTAGGATTCACAGTCGTATGTTTACACCCTGTCTGTGGGCCCATTGGGCTATTTCTCACTCCAGCCAGTGCACCACGACTGGTACATCAAAGGCTGTGCTATCCTGTATGGGATGGTGCATATAAAAGATTCCTTGCTGCTAAT

Transcript

ctg239-2.3-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01480	PWI	PWI domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR002483	Domain	PWI domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034268	Domain	RBM25, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036483	Homologous_superfamily	PWI domain superfamily	Interproscan
IPR052768	Family	Pre-mRNA_splicing_regulatory_protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18806	RBM25 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg239-2.3-1 global RNA-seq network