Gene detail

Detailed information of ctg199-5.0-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg199-5.0-1	SURFEIT LOCUS PROTEIN 6	chr4	7090519	7103128	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg199-5.0-1

GAAAAAGTGACACCTGGTGGCCAGATTTTGTCAACACGTGCATGTGTTTTAGCATCTTTACTTTTAATTAGCCTATAGTTTAAATGTAACACTTTATAGTCTGCTCTAGCATATGGATTTCACATTTCAAGTTCGTTGTATTTTGCCAGAAATCCAACGTATTTTGAGACGGACTGTATACTGATTTTAATTTGTAACCTTGATGGAGTCTTCGTCAGATTCTGATGAGTCGGTTTCTAAAGCAGTCAGTGTTTCCATACCCAGACTTCAGATTGAAACTGACAGAGACTTCTTCGAGTCGTTCATTGACCTGGTGCCAGCTACAACATTCTTCAATGCTGATGCCAAGAGGAAAATCCGAGGAGAAGATTCAGATTCTGATTCCGACTCTATGGAAGATGAAGATGATGAGCCACAACCACAGAAGAAGTCATCAAAACATAAAAATGGTTTTCAGAATGATCCGCTACAGACAAAAACCGTCTCACAGTTGCAGGGGGATCTAGCAGTACTTGATGAAGAAAGAAAGAAAAAGGGTAAAGTTGTACCCAAGAAGATGAAAAACAAGAAAAGTAAGAAAAAGTCCACCAAACAGGAAAAGCACACCGACATAGAGGCCCTGCGTGAAAAGCTGCATGCCAGGATGCAAGAGTTAAGGGGTAGAACAGGGAATTTGACTTCAGAGGAATTACGAGAGCAAAAAAGGCTAAGAAGAAAAGAGAAGAAGTTGGCGAAGAAAAAACCTAAGAATAAACGATCCAAAATAATTGGAGCCCAGTCAGATGACACTGTCTTGAGTAATTCAGCCTTAAAGGTTGCACCGTCATCACATAAACCGGTTTTTAACAAGGAGGGGAAAATGGTTTTTAGTAAATTTGATTTCACAGACACAGGGGAGAAAGATACCCCAAAAAGTGAATTCAAGGGAAAGGACTATAAACGTTTGTTAGAAAAGGTAGAAAAGAGGAAAGAAATAGTGACCAAGTTACGGGAAAAAGATGCTGCAGCAGCAGATAAATTTGAAGAAAAGATGTCATGGCAGGCAGCATTAAATAAGGCACAGGGCGCGAAGGTCAAGGACAATCCAGAACTTTTAACGAAAGCTGCAAAACGGAAGGACAAAATGAAACACAAAAAACAGAAAGTGTGGCAGGATAGACAAAACACAGTAAAACAAAAACTGGAAGAGAAACAGCAAAAAAGAAAGGCTAATATTAACAAGAAAAAAGATGAAAGAAAAGACAAAAAACGAAAAAAACTTATAAAGAAGGGAAGAATTATTCCAGGCTTTTGATTGGTTGGCAGTTTTTAAATATACACAAAAATACAAAACCGCTAGCTGTTTGCTATTTTTTTTACACCATGTATAAACACCAGTGTTGATGGTTTTCAGACTATATTGTCAGATCTGTAGATCTAATTGCCGAGAACTAAAGATAAAAAATCCATACACTGCATTTCCTCCCCCACCCCTTTAATTCCTTTTTAAAGTGCATCCATTTCTAGACCCAGAAATCAAAACTCATGTTGCTACAGTGACTGTGATCCTATCTGGCAGCCACCCTATTTTTAATAGCCTATTGAAGAGTCCGGGGTGTAGCCCAGTGGTAAAGCGCTTGCTAGCCAGTGCCCCACGACTGGCATATCAAAACCTGTGGTTTGTGCTATCCTCTCTGTGGGATGGTGCATAATAAAAGATCCCTTGCTACTAGTAGAAAAATGTAGCGGGACGATGTGTCAAAATTACCAAATGTTTGACATCCAAGAGCCGATGATTAAATCAATATTCTCTAGTGGTGTCGTTAAACAATTTAACACCTTAATGTGGATCCAGTTGTATGCAAAAAGTGTAAATATAAGTTTAGTGTAAAGTTAGACAATTTACGTCTGCCGTCATCTAATAAATCAAACCCTGATAAATAAGGCAATTTTATCAAAATAAGTGTTTGATTGTTTGACGAAATGTCAGAATTAAATAGCAAATTAAGTTGCTTTCCTGACAAATTTGTCTTTTGACTTTTCATCAAGACCTGGACCATCCACAAATTTCTTTGGTTATTTTATGTTCCAACCAGTGACTAGTGCATAAAACATGTCTATAGGAAAGTGCATATAAAGTAATTGTTGCTGATTGTTTGGTAAGAGTAGTCTGTGTG

Transcript

ctg199-5.0-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04935	SURF6	Surfeit locus protein 6	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007019	Family	Surfeit locus 6	Interproscan
IPR029190	Domain	Ribosomal RNA-processing protein 14/surfeit locus protein 6, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14369	SURFEIT LOCUS PROTEIN 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0042273	Biological Process	ribosomal large subunit biogenesis	Interproscan
GO:0042274	Biological Process	ribosomal small subunit biogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg199-5.0-1 global RNA-seq network