Gene detail

Detailed information of ctg199-1.3-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg199-1.3-1	AFADIN	chr4	6704027	6740398	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg199-1.3-1

TCAGGTGGAACTCTGAAGATCTATGGCGAGTCAGTGCGTCCGGACATCCCATACAAAACTCTGCTGTTGTCAACGTCCGACACCACAGAGATGGTCGTCAGGGAGGCCATGGAGAAGTACGGACTGGACAAGGAGGATCCAGAGAAATACTGCTTGGTGCAGGTGGTGGTGCCCCCAGGTGGACTGGAGTATCATGGTGGACAGATGGGGGAGGAGAGAATTATGGCCGACGATGAGTGTCCACTGCTGGTCATCATGCAACACCCCAAAAACAGAGGACACATCATCTTCCAGTTGCGACATCGTCCAAATAACTACCAGCAACCGACCAAGAAACGGCAGCGAGCAGTGTCACATGACGACATCCGGTTTGCGCACGAACCCAAACACGTCAACCTCGACCAGCTACCCTACTTGATAGAACTCAACTCACGAGTTGCTAAGCCACGGCGCCATGTTTTACCAATTAATGTCACTGAAGTTGGCAGTGAAAGATCACTGTCTACAAGTGGCCAATATTTACAGTTATATGGTGGTGATGTTATGCCAAGACACTGTGTGATAGCACACACGGAAGGGATTGTGACTGTCACACCAACGAGCCGTGAAGCCGAGACGTACGTTGATCGACAGCGCATTTACGAAACAACGATGTTAAAACACGGAATGACAGTGCAGTTTGGAAAATCTTACGCTTACAGATTCTGTGATCCACGATTCGAAGACCCTTCACATCGTTTCATACCTCCAGACGTTTCCATGCATAAGCCTGCTTCCATTCCCCACGAGACGAACTTTGACCTGGATGGTCACATAGAGACCATAGGACAGGAACCGACCCGAGGAGCCCCTCCCATGGACAAAAAGAGGGTTTCCATGGATCTTAGTAAGAGTTCTGAGCCCCAGCAGTCAGACGTGGATCTGCTACCAGCCAGTTTGGAGTTCAGAAACAATGAAGAGTCTCCACTGCTGCCGTCTGTGATCCTCAACGTGAACAGCCGTGCGGTGCAGTTCAAGCTGGCACCCACCTACTCGCTGTACATGGGCATGCGCCACTGTCTGGTGCAGGCCAAACACCCAGAGTTGTCTGCCCAGCACCGAGCCCAGCGAGCTGGAGACTTCATCAGCAGGATGTCCAAGATGGTGCAGCAAGCCATTCAGGAGAATCACAACGACCCGACGACGCTGGCATTTTGGATGGCGAACTCCTCTGAAGTGCTGCACTTCATCAAGCAGGACCGCGATCTGCAGAGCGTCAGTATGGAGTGGCAGGAAGTGCTGGCTGAGGCCGTGCAGATGGCCTTCCAGCACCTGGTGCGCTGTCTGCAGGTCGACCTGCACCGCGTGATGCCTGCCTTCCTCGACCCCAGTGACGCTGAGGAGGACGACGACAGGAGAGATATGCACCAACAGCAGTACAACCAGAGCAAGCCCATCCTGGCCGATGTGCTGAACACACTGTCAGCTGCCATGACGTTGTTACGACGTTGCCGTGTGAACGCTGCACTGACTATCCAGCTGTTTTCCCAGCTGTTTCACTTCATCAACATGTGGCTGTTCAACATCCTGGTCACCGAGCCACAGCTCCAGCTGTGTACAAGGGCATGGGGGATTCGACTCAAGCGCCGACTAGGTCGAATCGAGGCCTGGGCCGAGAAACAGGGGCTCGAACTGGCCGCAGATTGCCACTTGTGTCGCATAATACAGGCTGCACATTTCCTCCAAGCATCAAAGAGCACCGCTGACGACATCACCAACATCAGCTCCACCTGCTTCAAGCTGAACTCGATGCAGTTCCGAGTTCTCCTGATGCGCTACATCCCCGAGCCGTCTGAGCCACTGATGTCGCCGGTGTTCATCGACCGCATTGTGTCCATCGCAGAGAACATGGCCGACGAGCTGACACGGACGGACGGACGGGAGGTCAGGCTGGAGGAGGACCAGGACCTACACCTCCCCTTCCTGCTGCCAGAGGATGGGTACTCCTGTGATACGATCCGCGGCATTCCTAACGGACTGCCAGACTTCCTCAAGCCACTGCAGAACCAAGGGCTTTGTTACCTAATTCCAAATAACGCATCTAATGGAAGTTGGACAGTTTATATGGGAGAGGGAAAACCACTGGAGAGACAGCTACCCAAGGACCCGATGCCGAATGGGCTGCAGTCCTCCCCCACCCAGCCCATACCACAGGAGCAGAAATCCCCTGAAGTAATGACCGTCATATTCAAGAAGGTCAAAGGAAGTATGGGGCTCAGTATTGTCGCTGCCAGGGGTGAGGGTCAGAGAGAGCGTGGAATCTACATCAAGTCGGTGGTGCCAGGTGGAGCTGCTGCCCTGGATGGTCGTCTTCAGGCTGGAGACCAGCTCCTTGAGGTTGACGGGATGAGTCTTGTTGGGCTCACACAGGACAAAGCGGCCGAGCTGATGACGCGAACGGGCCTGACTGTGACACTGAAGGTTGCCAAACAGGGAGCTATATTCCATGGACTGGCAACACTTCTGAGTCAACCCTCACCAACCATGCAGAGAGCTGGAGGCACACCTCAGAAAGGTCCTGGATCGAGTCCAGTTCCACAGATGAACAACAACAACCTGCGAAACAAGCCGCATCTCGAGGACGGACCGCCTCCCTACAACGATGTCCCGCAGGACATGCAGGACCAGGGCCCCGGACCTCACCGGATGGTTAATGAGGGTCCTCGCAAACAGCCCAGTCCGAAGATTCAGGGTCCTCTACTGAGTGCTGGCCAAAGTCCTCAACAAGGTCCTCCACCGGGCCGGGGCCAGCAAGAACATCCTCATGTTGATGACCGATTGCGTTACGCAATGGGAGCCACTGAAACCCAGGGTCATCCCAACCCTCACCGGCCTCACGACCCCAACCCTCACCGGCCTCACGATCCCAACCTTCACCGGCCTCACGACCCCAATCTTCACCACAGAGATATGCAGGACAAAGATCCGCGGTCCAAGTCTACGTCCAACCTTCACTCCGAGCCACAGTTTGAGCAGCATGATCCTCGCATGATGAAACCGGCAGCATCAGTAGCCGCGCTCGGCCCCGGCAGTCATGGAGGATACGCTCAAGGCCCGCGACGGGAGGAGTACTCCCCATACACTCAGAAAGTAAACGACTACGAAAACCAGCCCAATATGAACACGTACCCCAACGCGACCAGAGCCGACAAGCCGGGTCCGGGATTCCAGGACATCAATCAGAACATGGTGGAGGCTCCTCCTGGCATGAAGCCGGGTCACTACCACAGTCAGCCTCATCTTCATCCCAATCAGCCGCCACCTAACGACAGGTCGTCCATGTCTTCGAAGGCCTCGAACACGAGCAGCCGAGAGAACCGACCGCAGTCTGCGTATTATGACCCGCACTGGAACCGAGACGAGTTCGGTGGAATGAGGCCTAAGTCAGACGAGATCACGCCGAACCGAATCCGAGAGTGGCAGGAGAAGCTGGAGGATCCTCGCAGTGCTCATTTCCGTGGCAACCAGATGCAGGATCCTCAACAGATACACTCTCCCAGCTCCCCCAATTCCTCACACTACCAGACTGGGCCTCCAATGTCGCCTGGTTATCAACAGGGAGGCCCTGTGAGGCCCCCAAATGAAGACATTCCTAAAGTGACTCTGAACAATACCTCGCGGCAGCCAAACTTCTACGAGAACACAATGCCTGTCCAGAAGGAACCTCAGCCACCATTCCACCAACTTCACAGACCAGAGGAGAGGCCACGGCCCGCTGTAGCTCCCAAGCCCAAACCTTTCGTAGCTCCGAAGCCTTCTCAGCAGCGAGTTCAGCATGCCGATGTACCGTTCAGCAGTATGGATAATCGGCAGACCCAGCCACAGTTCTTCGATTCCAAGCCAGCAGCCAAAACTCAGCCGCAATCTCCGAACCTGTATCACCCACAGGCCACCAAGCAGCCAGCGTACCAGCAGATTAACAAACCCCCAGACAAGAGGCCTGCATTTGTCCAACCGAAAAAATACTCTCCTGATAGACATTCGGCCTCTTACGGATACAGGAACCCAAATGAGATGCAGTCCCCTTTATCAAACGACACCCCTCCCGATCTGCCTCCGCCGCCATCACCTGAAGATATTCATGACAACTCCCCACCCCTTCCGCCTCCCCCGAGTCAGGATTACACCATCGAGCAGCAGCTCCAGGATGAACAGAGGCGACTGATGAATCAGCTGGGCGGTCAGCTCGACCGGACTCAAAACAACCAGTATGGTTCTTCCATGGACTCGAGATACCCCGAGTACAACCCCCAACAGACAGGGCAGTTCCAGGAGCGTCCTCCCGAACCCAGGGTCAGTTTGTTCAATGGGCCGGCATCGCAGCAGAGCAACGTCCATCCCAACTATCAAAATATCAGCTTCCCTGGAGCAGAATCGCAGCAGCCCCCTCCCGTTCCACAGCCCCCAGCTGAGCATAATCTGTACGAAAGTTACGAACCCCGGCGGTCAGAATCGAACTTCCATCCGCCGGAACCCCATCCCAGTGCTATGCACTTGACCGTGCATGAAAAGGAGTACACGATAGCTGCGTCTCCGTGGGACCGTGAGGAGAGGGAAAAGGTTGAGGCTCAGAAAGAGGAAGAACTGGCCAGGTTGAGAGAGGCGGAGATTGCCGAGCTGGAATCAAAAACCTACCTGAATCCCCAGGAACAAGATCGACTACGCAAGCTGCGGCTAGAGCACGAGTTCCAGAAGCGAGTCCGAGAAACGAGTGATCGAGATGATGACGATGATTCAGACAGTGAGGCAGCCGAGAGGCTTTACTCCCGAGACCGCATGATACAAGTCATGAAGGAGGATCTAGAAAAATCAAAGGCCAGGATGATGGACCTGGAAAGAAAACGATTGGTAGAAGAATTCGAAGCCGAAAAAGATCGATTAATAAGACTAGAACAGCGGTTGCAGCAGTTTGAAAAAGATCGGGAAGAGCATAAAAAAAGAATATTGATGCGTCAGGAAATGAAGCAAAAAGAAAATGAAGAATATCTAAGGAAACAGCGGGAAATGCGTGAAAATCAACGGCTAAAGTTTGAAGAGCGGAAGAGATTACTGATGATGGAGGAGGAGAAAATGAAGCAAAGAAGAGAAGAAGAATTAGCAAAGAAAAGACAAATGGAAATGCAGGCCGCACGTGATGCCGAGGAAGCTGCCCTGCGAGCTCAGATACGCAAACAGGAGGAGGAGGCATCACGGCAACGGATGATGCAGCAGCGACAGGAGCGTCTGGACCAGCAGCGGGAGATCCGCGTAGCAGACGAGCGGCGGCGCCTCAACTCGGCCAACCAGAACCCACCTGGAGGCTACGGCAACTACCAGCAGTACGCCAACCTCCCTCCTCAACAGCAGCAGCAGGGGGCTGGCGACAACCTGCGACCCCCGGCACCCCCAGAGAGGAACAGTTCTTACGAGTTCACCAACCGCGGCCCCAAGGGTCACCAGTACCCGGGGGTGGAGTACCAGGATGAGCCCCAGGCCGCTCCCAAGAAGTCGGTGTCCTTCAACACCCGACTGGAGACGCGCAACATCTACAGTGTGCGCAGCATGAGCGAGTCCGACCCCGATTCACAACCGGGGTCAGTATCGTCATATAGGACTTCCCAGTCGGACGCCCTCCCAGGCTCGCCTCTCTCCGGTCACCAGCCTCAAATGAACGAGGTTTTCCACTCACCTCCTGAAAATCAAAACATGGCCAATAATGTGAAATATGTGGCAGCAGAGACAACTCCCGGTGTGGTCGGGACTCAGGAGGTGTACCGTGATCCCAGGGCGAGGATCGCGGCTGAGAAAGCAGCAAACTCTATAAGGAAACCCGGACCCGAGAGGATGTCATTCAGGGACAAAATGAAATATTTCGCGGTGGAAGCTGGGGAGAACACGATTAAGTTAAAGCCTAAAGTATCAAAAACACAGCGTCAGATAGAATCTCAGTTACATACGGAGAACGGCCAATAG

Transcript

ctg199-1.3-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498	FHA	FHA domain	Family	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF00788	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF01843	DIL	DIL domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000159	Domain	Ras-associating domain	Interproscan
IPR000253	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR002710	Domain	Dilute domain	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR028842	Family	Afadin	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR037977	Domain	Afadin, cargo binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10398	AFADIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005911	Cellular Component	cell-cell junction	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg199-1.3-1 global RNA-seq network