Gene detail

Detailed information of ctg1406-1.2-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg1406-1.2-1	POL PROTEIN	chr12	49140308	49149520	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg1406-1.2-1

ATGTTGGGAATTGGACTTGTCAAGATGGACCAACGGGAACTGGAAAATCCACATGTATCATGCCGTGTAAAATCCATCTCCCATACAGATGACACAGTTTATGGTCAGGAGCAAGTTCCACAGTCCACCTCTGCACCTAATACCATGAATACACAACCGTTCTCGGAGCAAATTTCCGTGGATCCTGATGGATGTTTGTCCCCTGATATACGTGACAAATTCAACAAACTTCATTTAGCATATGATAATGTGTTCAACCCAACTGTCTCAAAGTATAATGGTGCCAGTGGTAAACTCGAAGCGGTTGTAAACATGGGCCCCACACTATCACCCCAAAGGAAAGGTCGGCTGCCCAGTTGTAATAAAGACACTCTGATTGAAGTCAAAGCTAAGTTTGATGAACTAGAAGCTATGGGCATTTTTGCTACCCCAGAACAAGTTAATGTAACAGTGGAATATCTCAACCTCTCATTCTTGGTCCGCAAACCAAATGGAGGCAGTCATCTTGTGACCTCCTTTGGAGAAGTAGGTATCAGAGTATATACCCGCTGCGCCATGGGTATGCCCGGCTTGGAAACCTATTTTGAGGAACTGATGTCCAGGGTGCTTGGCGACCTGATTCAAAGCGGATGTGTTGCCAAATTGGCGGATGATCTTTTCTGTGGTGGAAACACTCCCGAAGAAACCTTAACAAACTGGAGCCTTGTGCTAGCCGCATTAAAATGTAACAACCTCAGACTAACAGCATCCAAAACTGTAATCTGCCCTAAGACTACAAACATTCTCGGATGGATTTGGTCCAAAGGCACCTTGAATGCAAGCCCACACAAAATTGCTGCATTATCAGCAGTATCAGCTCCGCCAACAGTACAGGGACTACGTTCCTTCATCGGTGCATACAAGGCCCTCAGCCGTGTTCTTCCAGGCTACGCAGACTTACTGCATCCATTAGACAATGCAACAGCTGGTAAACAATCCAAGGATAAAATACTTTGGACAGATGACTTAACAGAATCGTTCTTAAAGGTTCAGTCTAGCCTGTCTGACAACAAGACCATAACAATTCCGAGACCAAATGATTGTTTATGGATAGTCACAGATGCATCTGTGAAAACCTGTGGATTGGCAGCCACATTATATGTCTACAGAGACGGAAAATCCTTACTGGTTGGCTTCTTCAGTGCAAAACTCAAGAAGCACCAGGTAACTTGGCTGCCATGTGAAGTTGAAGCCCTCGCTATAGCAGCTGCAGTAAAACATTTCTCTCCATTCATCACAGCCTCATCTAATCAAACTCAGATCCTGACCAACAGCCGTCCTTGTGTTCAAGCATATAACAAACTGTGCCGTGGTGCACTTTCTGCGAGTTTACAGGTTACCACATTCCTGTCTATTGTCAGTCGTTACCAGGTTGCTGTGACACACATATCAGGTGCAGCCAATATCCCATCTGATTTCTGCAGTCGACACCCAATTTTTGCAGAACAACCCTTCCAGCCAACCCGGGACCGTATTGTGGTTCCACGATCTGTGCTGGATGGATTGTTAACTTCAATGCATATTCGATTTGATCATCCCTCACTGTATCAAATGAAGCAAGTCTTCACTTGGTATTTCTTTGCCTTAGACTTGGACAAAGCTCTTCATTCAGTCATCTCATCATGTCACCATTGTACTTCGCTAAAATCTATACCATCCCAGCTTTACCCACAGTCAACAACAGCTCCACCAGCAACTATTGGTGTCTCTTTTGCTGCAGACGTAATGAAGCGCTACAGACAGTTAATTGTTGTGCTTCGAGAGACTGTGTCATCATTCACCCTCACATGCTTCATTGAGAGTGAGAAGCATGATCACCTCCGAGAAGCCATCCTCACATTATGTGCAGACTTTCGCCACTTAGGTGATGGTGGTACAACTATCAGAGTTGACCCAGCTCCAGACTTTGTCTCCCGTGCCAAGGACCCAGTTTTAAGCCAGTATGGTATAACCTTGGAAATCGGATCACCAAAGAATCCAAACAAGAACCCTGTAGCAGAACGAGCCATAGAAGAACTTGGCTTAGAGTGTTTACATTTATCCCCTGAGGGCGGACAGCTGTCCAGAGTTACACTGGCTCTAGCAACAGCCAACATGAACACCAGGATTCGGAAATTTGGACTTTCAGCATGGGAGGTATTTACCCAGCGTGATCAATTAACAGGTGAACAATTACCAATTTCAGACAGACAGGTCATTCTGCAACAACACCTGTTAAGACTAACAAATCATCCATACAGTAGCAAATCGAAACCCTAA

Transcript

ctg1406-1.2-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR051320	Family	Viral Replication and Maturation Polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33064	POL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg1406-1.2-1 global RNA-seq network