Gene detail

Detailed information of ctg119-3.3-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg119-3.3-1	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	chr4	110346603	110358260	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg119-3.3-1

ATGCCGCCGTTACCGTCCGCGGATCGGCGCGTTTTAGTGGAGAGTATGATTGCCGAGTTTCTCGACAAAGGGGCCATCCAGAGAGTCAGTCTGGACACTCCGGGATTTTATTCTCATCTTTTCTTCGCCCGGAAGAAAAATGGGGAATGGAGACCAATCCTAAATTTGAAGCCACTGAACGTCTACGTCGATGTTCCTTCCATGAAAATGGAAACGGTTCATTCGGTCCGGAACCTGCTTCAAATTGGGGAGTGGGCTGTGTCGATCGATCTGAAAGACGCATACCTCCATGTCCCGGTGCACAAGGCGTTTTGGAAGTTTCTGCGCTTCCTGTTCGACGGGAAAGCGTACGAGTTTCGTGTGCTCCCGTTCGGTTTGGCGACGAGTCCCCATGCTTTTACACGTGTGGTAAAAGCGGTGGTAGGTCATGTTCATTTGTTAGGGGTTCGAATGCATACCTATCTGGACGATTGGTTGATCCCAGCTTCGTCGCAACAGGAGTGTCAGACCAATGTCGGGTTGGTTTTGGACACGATCCTCCAATTGGGTTTTATTCCCAATTGGGTGAAATCGGAGTTAACGCCGGCTCAGATTTTCACATATCTCGGAGTGGTCTTCGATCTTGTGGTAGCGTCGGTTCGTCCCACCGATGCGCGTATCCACAATTTCCAAACGTCGGCGCGACGTTTGATGGGGGAGCAAAGTACTACGGTACGATCTCTCCACGTGGTGTTGGGCCACCTCGAATCTCTGGCCTCATTGATCGTGCGGTTCAGACGATTCAAACGACCACTCCAGTGGCATTTGTCCCCACGGTGGGACGGTCACAATTGGGACACGATAGTGCCTCTGGGCCCATGGTTCACTCATCCGATACAGGAGTGCCTGTCGGACAAGTGCATGTCCCTATCGGTTCCGTTGCACCCCCCTGCTCCAGATCTGATCCTGTTCACGGATGCGTCGCTGCACGGGTACGGGGCGCATCTGTTGGATCAACACATTTCAGGGGTATGGAATCTCTCCGAGAGGAAGCTTCATATCAACTGTTTGGAGATGGAGGCAGTGCATCGTGCCTGTCTTCATTTCCGGTGTGTTCTTCGACACCGTCGAATTCTGTTGAGATGCGACAATACGTCGGTAGTGGCATATCTCAATCGTTGGGGTGGAACCAAATCGGAGACTTTGGGTCGCAAAGCTCTTGCGATTTTGGAATTCTGCGACCAACTAGGGACCACTCTGTGGGCGAAACACATTCCTTCATCGGTGAATGTGTTAGCAGATGCCCTCAGTCGACATACCCCTGTTCAGACGGAGTGGATGTTGAACAAAGGGGTGGTCGCAGCGGTTCTTCGGGTGTGGGGCAGTCCACAGGTGGACATGTTTGCCACACGGTTGAACAACCAATTGCCGGTGTTCGTGTCCCCGGTACCGGACACATTGGCGTTGGAGTACGACGCGTTAAGTATGGATTGGACGGGACTGGATTTTTATGCCTTCCCTCCTCCTGTCTTACTCGGCAAGGTGTTGACCAAAGTGGTCCAGGAACCTTGTCACGTGACGTTGATAGCTCCTCTGTGGGTGGCGCAGCCCTGGTTTCCACAGCTCCTGTCACTGTTAGTGGCAGTCCCGTTCCGATTACCAGTGTTGTCCGATCTACTCAGCCAGCGACTGAGTCAGACGGTGTGGCATCCGAAGCCGGAGGTCTTCCGGTTTCACGCGTGGAGGTTATCAGGGCTTCCTTGCGACGCAGAGGTTTTTCGACAAGAATTGCGCATCTCGTCTCTTCAGCAAAGCGCAAATCTACCGAGTCGGTTTATCAGTGTCACTGGCGTATGTGGAGTGCCAGCGTACCACACATCGGGACAGTGTTTAGCAAAGAAAAAACATGTCACCAAAGATCTTATTAATCACTCAAGAATTCGAGGCATTGACATTCTCCGAAATCCAAAACTTAACAAGGGAACAGCCTTCACACTGAAAGAGCGTCAGTTGATGGGCATCCATGGCCTGATTCCTCCAGCTATTCGTCACCAGGATGATCAAGTGGTACGGGCAATGACCAACTTCCACAAACGGAGCAATGACCTTGACCGCTACATCTACCTGAAGGCGCTCCAGGACAGGAACGAACGGCTCTTTTACCGAGTGCTGGTTGAGCATGTGGAGTTGATGATGCCTATCGTCTACACACCCACAGTGGGCCAGGCGTGCCAGGAGTATGGGATTGTCTTCAGGAGACCACGGTGA

Transcript

ctg119-3.3-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00390	malic	Malic enzyme, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR012301	Domain	Malic enzyme, N-terminal domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR046346	Homologous_superfamily	Aminoacid dehydrogenase-like, N-terminal domain superfamily	Interproscan
IPR052055	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004470	Molecular Function	malic enzyme activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg119-3.3-1 global RNA-seq network