Gene detail

Detailed information of ctg109-9.5-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg109-9.5-1	PROTEIN CBG26694	chr8	78988130	79015634	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg109-9.5-1

ATGGCCATGACGACTCTAAAGACCCATGTTCTTGGGCACTGTTTGGTGGACTTAAACATAAATGGTCATGTTTATACATCCACTCGACTGGGTGTTCTTAAGAATCTTTGCAGTGACCTCATTCTTGGACAAGATTTTCCAGAGCAACACAAGTGTGTTATCATTGAATTTGATGGCAGTAATCCTGATTTGGTAATCCCTAGGACAAAATCAGTATCGGCACTTTCAGTAGCTTCACTGGGTGAATCATCATTGTTTGCAAATCTTCTTCCTGAGTTTAAACCTATTGCAACAAAGTCCCGGCGTTTCAGCAAGGATGACAAGAACTTTATAGAACAAGAAATCATTCGTCTTCTCGCAGATGGTATTATTGAGCCCAGTACATCACCTTGGCGTGCACAAGTTGTAGTTGTCAAGGATCCTTTACAACGACACAAGAAACGACTGTGTGTGGACTATTCCCAGACCATAAATCAGTATACAGAGCTTGATGCGTATCCACTGCCTAGAATTGATGAGATGGTCAATAACCTCGCACACTACAAAGTGTTTTCAACATTTGATCTTAAAAGTGCATATCATCAAGTTCCAATACAAGAACCTGATAGGAAGTTCACAGGATTTGAGGCAAATGGTAGACTCTACCAATTCTGCCGAATTCCGTTTGGTCTTACAAATGGTGTGGCCGTTTTTCAGAGAGCCATGGACAGGATGGTTGAAGAGGAGGCACTCAGAGACACATTCCCGTATCTAGATAATATCACAGTTGCAGGCCGTGATCAGCAGGAACATGATGCAAATGTTAGTAAGTTTCTTGAAGCTGTAGAGCAAAGAAATTTAACTCTTAACAAAAACAAATCTGTGGAAAACAAGACATCCATCAATATTCTTGGGTATCATGTTGGTAATGGCGTCATCAAACCAGATGAAGAAAGACTTAAACCTCTACAGGAATTTCCTCCTCCCACCAATGTGCGTTCTCTAAGAAGAGTTGTTGGTATGTTCGCTTACTATGCCAAATGGATACCGAACTTTTCTGACAAAATACAGCCACTTGTGAGTGCTAATGCCTTCCCATTAAGTAAGACTGCCCTTGAAGCTTTTGATCTGCTAAAAAAGGAGCTTGAAGGAGCAGCACTACAATCCATAGATGAAAGTCGTCCTTTTGTGGTTGAGTGTGACGCTTCTGAAGTTGCCATATCTGCGACATTAAACCAAGGTGGTCGGCCAGTTGCATTCATGTCAAGAACACTGCAGGGTAGCGAACTACATTACCCACCTTTAGAGAAAGAGGCGACAGCTATCATTGAAGCTGTGCGCAAGTGGCGCCATTTTCTGGCTGGTCGCCATTTCACACTGGTAACAGATCAGCGCTCTGTAGCTTTCATGCTGGACAACAGGAAACGTTCAAAAATCAAGAATAACAAGATACAAGACTGGAGAATTGAACTAGCTTCATTTTGCTACACTGTGAAGTATAGGCCTGGAAAGGACAACGTGGCACCAGACAGTTTTACTCGTGCATTTCTTTCTTCAGTATCAACATCTAGCCTAGATGATATCCATAAAGCCTTGTGCCATCCAGATGTGTTGTTTCCTGCTGGAACAACTTTACCAACAGTGGACCCGGAATCAATCCCAGATGGCGCTACAAAATACACTGACCCCAAAAATACAGGGAGTTATCTGTTTGATTCTGAGGCTAATAACGTAGAAATGGAGCGGCTGGCACTCACTATCTTAGTGAGCCACGTCAAGTCGCAGAATGACCGCTACTTCCGGGCTCACCCAGTTCTTATAGCATGCGCAGAGAAAGTCATGGTGGATCTCACGAACCAGGATAAACCGTTGATGGTGATCCGCGGGTACCAGACCAGAACAGAAATCGGATCAAGTCAATCGGATCAGGATATTTACGCTGCAGCAGGGACCGCAATTCAGCTGATGTTTCGACCCAAAGTCAATGGCGACTTGCTCAGCATTGCCCAGGCAGCTTTGAATCACTGTCCTTTAATCTTCGAGCGAGCTGAACGCGACTTCGGCTTGGTGATGATGTCAGACCGCGTCCATATCCATATGACTGAGGCGGACGGCGGCGGGGTGTTTCTGGGTGTCGACGGATACACGGGGAGCGAGGCGGGCAACTTCGAGAACTGGGCGTGGCAGCAGATTGACAACGGACTAGACCCAGAAGCAGTAGACACGTGTACGTCGTTCACAGGGCTGCCCCCTGGTGGCGTATATCCAACAGGCAGTCCGTCCCCTGAAGCAACGGTTGGACACGTAGACGACCCCATCACAAGAAACTCCGAAGACTTTAATAACCTCGTGCAGTATCCTGGCCGGTCAGTTGAGTTTGAAAACGAGGAGCGGACGTCGCCGTGGTGTGGTGATGTCGACACCCCGTGTCAGGACTGCAGGAGTAAACCACAGGGCAACTCTAGGTCCAGGAGGTGTGCCAGTCGACTAATGAGCCCGAGAATGTTTGCGTGTATCAGAATTCTCCAGAAACTCGTCAGGCACAATCTCAACAGGAAACTAAGGATTGTGTCTGCGTTTGACGAAGCGCGAGAAGGTCACACTCCTGACGCAGCCTCTCTCCGGACTGAGGGACGTCTGCTCACACTCAAACTCAGCGGCACCAACTCGGGGGCAGACATGAACACCCTCAGCAAACTGGCGCGCTGTGCAGACATCGACTACGTCAAGAACGACGGTACCAGAGTCATTGTGGCTGTGAGAAAATCAGTTGATTGGAATTCTGATAAAGTGAGGTTTCCTGAATCGTCTGTTCTGATCGTGTCAGCCCCAGCATCAAAGAAAGACATCTACAAGTTGCCGCGATACGTTGATGAGAAGAAACACCCGCTAATCGACCCCGACAGCCAGGAGGACCTGGAGTTGGCCGAGAACACTCCGCTGGGTTTGTTCAAGTCTAAAGACTCCGCTTACCGCTACCTGCGAGTCCAGCCTAGACTGACCATGTGTCACTCGGCCCTGCTTCACAAACTCAACAAGTGGAATCCACAAGATGTGAAGACCATTGACATCGTCAATGCCTACATGTCTGCCCAGGAGGAACAGCTCAAGATTGACGCGATGGACCAGCGTTTTGGCAAGTTCTCCAGCGGAGAAGGCATGGAGATAAGACTTGGAGCCTCAGACCCGAACACCATCGTCGACGCGTCATCGCTGTCGTTACTGCTGAAGACGACTGTAGACATGTGTGGCCCCATCTTCCACGACGCTGCCTCAGCGGTAGGCATCGGGCTGTACAAGGACACGGTGTTCGTTTGCATGCAGGACGAGTTTGATTTCTGGACGGACGATCAAAGTCTTATTCCCAGTGAATACTTCCTTGCTTCATATAAGGAAATGCTACAGAACAGGTTCAAACTGGCATCGCAACATCGGCTGATCGACCCAGATGACCTTGACGATGCCTGTAGTAACGCTGACCCGCCAGCCCGCCAATCTGTACACTTCCAACACACGCACTCGGCCCGAGTTGTGAGCCGAGGCCCCGACGAGTGCGTGCCATCCAGTGGCAGCCAGTTCTGTAGGGACACGGAGCAAATCAGAAAGAATCACATCGAGGTCATGGCAAAGGAATTGGCGCGCAAATGGTGGTATCACGATCACGATGAGCTACAGGCAGCCTTTGAGAAGTGTTTCAGCTTATGTGGAACATGTATGGATGGAGAGATCTGGGACGAGAAGGTGAAGAACTGTGACAACTTCCTACACTGGGCACCCTTCGAGCTGCTCAACGAAGGCGAAGTGTCGAACATCTTCCCCCGAGACAACGCCGCGCTGCGCAGATACGCCAGTCAGAGCGGACACACCATAGAGGACTCTCCTCTCTTCCATCTTGTCTTCAACACTGTTGGCACGACATACCGCCCCGACCCTAAAGCGAGTGTCCAGGAAGAGTTGTACCCCCAGGCTGAGAACCCTAGTCCGGTGTTGGAACTGCTTCTGAAAATGTACTGTATTAACGCTGTCGGGACCGTCAAATTCTGGGTGGCCGACGAGACAGACACGGTGTCCCTGAAAGAAGCCTTAAGGGCTGTGGTGGTGTACAATAAAAACGTCACCGACATCGAGGTATACGTCATGAATGAGGCCAGCAGGGACGCGGTTGAGGCGACCATTGAGAACCTGGTAGCCGAGTGGTCGACCAGCTCGTGTCCGCTCTACACGCGGGAGTTCATAGCGCAGACGACAGTCCGCAGTCTGTCGCACGACATTACAAAACGTTCGGTCAGTCCGTCTGTTGGTGAGGAACTCATCAACGAGTTCAACAGCTGGGAGTATCGGTGGGCGAACCAGGAACTGTAAAACACACAATACCTTCATATAATTTTATACATTTACATTTCACTCAAAATAGTGCTGAACTCACTTGGTAAATTAAGTTATTATATCACATAACACTTGATATGTTATTGGAAAATATGTAAGATAATTGTACCGTTCTTGTTCCAGCATTCGACTTAACCATTTTATAACTGAGCTTTAGTCTATAGAATCTGATCTTAATTTGTTAGATAATGTTTGTTATTTAACTATATTTTATTTTTAAAATGTCATTAGAGTTGGTACAGGTTTAAAACTTAATAATATGGGGTTTTTTTTATATTAGTTTTAGCATTATTATTTAATATTTGGTTTAAATATATGCAATTCCTCGGTTCACTTTTGAGGCAAAGGACTGATGCGTCTTACCTTAAATCAATCATCAGATAAACTTAGTGCACAGATAAATCTACGCTGTGATAGTTGCAAATGAAGTTATACTTGACTTTCCATTTCAAACTAAATATATTTGTTCAACTATGATCTATTTTTGCATCAGATTGTCCAATTTCCAAAAAAACCCATAAAAAAAAAAAACCGAATGTAAATTTTGTTTAAGCAAATCTGTGATAACATTTATTGCGAACCGTCCGGAATTACAAGGGAATGTCACGTCAATATAGAACTAGAAATTATTGGGAAGTTTTTTTGTTAAAAACAAGTTTTATTACAGGCGTGTTTATGTGATTACCCTGACCTCTTGTGATTTTTAAAATCAAAAGCCTCAATGGACTCGGGAATAACTGTCCTCGTATGGAACAGGCACTAAATAGAGATTCAGGGGTCATTGCCAAACGTCAATTCGACTGCGGTGTGCAGAGATACGGTCTTCATTGTGGATAACTTTGTGTTGTTCAGGTAATTATATTATAGTACGTGGGGGGTGGTGGAAGAGATTTAACAGCCCGAGTGTATCAATGTTGTTTTTGGGACAATTAACAAAATTCTCCATTGGCAAGAACAAAGACCACGCTCTATTATTATTATGGTAAAGACATTTCACAATTATTTTTGTTTGTGATATACTTTTACTTACTTGTTTCTGTGATAGTTGTCATTGCACGTGTGATATTTTGTTTTCTTTTTTATTATCACAGTACATCGAGGGCTCATAACCAGAACTGATCATATCAAATATCATGGTTTTCACTACAATAAGTTTTACCATTTAATATATATAGCTTTGCTTCACTCATTAGTTACATGTATGCAAACCCCTCCAAATAAAAAATAAACTTAAAAGAGAAAAAAAAAGCAGAAGGAAATGTGAAATGATGTGCTTCTTTCACTTTTGCAACTTTTTAGAGTTCTGGTGCACAGCTCTCGATAATATACTGATTTCTAATGGAAACTTGACATACATAAAATTTGAATAATTTGATAAATATTGTTGGTAATCGAAAAGAATCAATTTCAAAACCACCTTACAAACACTTTGCATGTATCATGAAGTGCATTGTGACGTTTAGATCAACTTTCTGATTCTTTCATATCCCACTGTACCGTTTGTTGATTTTCTCCAAAATAATTGCAGTCCTTGTAAAGTTTCTTTTGGATGTCAGTGTATTTAATATTTCTGCCCTATTCACTTTGTTTTCACATCTAATAAAGAATTTCTTTG

Transcript

ctg109-9.5-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01085	HH_signal	Hedgehog amino-terminal signalling domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000320	Domain	Hedgehog, N-terminal signalling domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR009045	Homologous_superfamily	Hedgehog signalling/DD-peptidase zinc-binding domain superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007267	Biological Process	cell-cell signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg109-9.5-1 global RNA-seq network