Gene detail

Detailed information of alvinactis_v1_g9760 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g9760	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4	chr_4	29002846	29042540	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g9760

atgaaattcgctaaaatttcagggattcccagagccagcgacaaaccaaatgacgagcgggctctggaaaaaggggctaaaagtggtccaaatgaactgaaaccactaccagagcaaaagaacacaacaagcaacactccagAGATTGTATTAGATGATAAAGACATCTCtgttactcatgctacgcactcagtggGTCCTATACAAACCCCTTCTGAGTGGCCACTATTGGGAAAATGGTCTTCTGTTAGCAAAATGTCCCAGTCAGCTGAAAATAGTCCAGTGCCTAGCCCTGGAAGACCTGACAGTACAGAAGGATCGAAGTCAACTTTTTCAAAGGGAAGGAAACGTAAGAAAGCCTACAAGGACACCAATGCACCCAAAGCCCCCCTCACGGGGTATGTGAGGTTCTTGAACGAACACCGTGAAAGGGCAAGAAATCAAAATCCTGATTTACCTTTCCATGAGGTCACTAAAATCCTGGGAAACATGTGGACACAGCTACCAGTGCCACAGAAACAGCTTTATTTGGAAGAAGCAGAAAAGGACAAAGAAAGATACATGAAAGAACTAGAAATGTACCAACAAACTGATGCATATAAAGCTTTTATGTCCAGACAAAAAGCTTTGAGAAAGGAGAGTGATAGTGTCAATGGAACAGCTGACTCACAGGGTGGTAATGATGATACTGATAATTTACTGTGCAAACCATGTAACATGTTTTTTAATTCACCTCACAATAAACGGGAACACTTACTGGGAAAGAAGCACAACATGAATCTCATGGAATATGCAGAGAAAGAGAAACAAGAATTGAAGGAAAAAAGTGCCCCAGTACCTGTTAAAAAGGAGGAAAAAGAAACAAGTGAAGAAAGTTTTCCTGTTGATGGTGATATTCCTATATTTACAGAAGAATTCTTAAACTACAATAAAGTTCGAGAAAATGAACTTAGAAGACTCCGTAAAACCAACACAGAGTTTGAAGAACAGAATGCAATTCTCAGCAAACACATTGAAAACATGAAAAAAGGAATTGAAAAACTAGAAAATGAAGCAGACGAGCAACAGAAAGAGATTACAATACTAGAAAAACACCTCCGTAAGCTGCGACAAGTCTTGAGGAATAAGTTATCAGAATTGAGTATTGCTGGCATTGAAGAAACCAGAAATACAGATTCATCTGTAGACAAATTTGTTGGCAGACTGCATCAGTCCATACAAGCAAATCCCAAAGAAAATTCAGAATTGGTTACCAAGATCAAGGGACTAATATCGTCCATTGATTATCCCAAtcccttactaaACTTCGACTCTGAACCAGAAGAATTTGATCGATTCCATTTGATCGATGACATTCAGCGAATCAATCTCGCACTAGGCGCAGACAGCGATGACGCTTCGgaggaagaagaggatgaagatgaagaaaatgaagatTATTCAGAAGAAAATTCCTCCAAGTTTTCTCACTTCAAAGCTTCCAATCTCACCACAACGAAAGTAAGCGACTCTGATGATATACATGTACTAGAATTGCCAAGCACATTTCCTACAGACTCATCATCAATGGTGCATATTGAAACCCCTACATATACAGAACTTGTGACTAGATATACCTCAATAAGCCAACAAAATGGTGAAGATATTATAGCAAATGGTTGCTATAGTAACCAAGAGGCAACTCAAGTTGCTGGGCCAAGTGGTTACCTTGGTAACCAAATATCCAATCAAGAGCCTGGTCAAAGTTCATTGCTAAATTCTCTCAGGGGAGAACCCTTACACACTGAGCTCCCATCTAATAATTTATCTAGATGGACGGTTGAGCATGAGCTGTATAATTTTGCCACTGTCCAACAAGGATTCAATGACGGCAGCCAGGAACACAGTGTTTCTTACACTGTCAACAAGCTTTCCGTATTAGACAAGGAAGTGTTGCAAGAATGTCTGGCCAGAAACAGGGAATACCAGAGTCAAATTTTGAAAGACCTCCGTATAATTGAATCCTCCATAGTAGAAAACAAGAAGAAACAGTTGAATTTGGCCCAAGTTAGATATAATGATGATATGGATGATGAAGACTCTGTTTTACCACCTTTACCAACTTTATGCAAGTTTTCTTTTCCATACTTCAAAGGCTCTAATGACCAAGGTCCACCAGATAATGAAGATGCTAGGCAAAATAGAAGACTTATGGCTATAAGTGCCTATGAACAAAAACCCAGAGCATGGAATGAGAAGGAAAAAGGGATACTTACAGAAGGTGTCAGGATGCAGAATCTTAAAATCAAACTAGCTCCATTACTAATGAGATTGAAAGACCTTGAAAGCAGACGAGGAGTAAACCTTGATGAAGTAGAGAACCTCAAACAACAGATCAACAGGATTAAAGACACACCACCCAAGTCACTGGAAGAGAACCTGGAAGGGCTTGACTGGGACAAACTCAGCACAGAATATCTCACAAGGCGCAGTGCAATGGAGTGCAAATTACAGTGGTGCCATTTTGGACATCCTCGAGTAAACAGAAAATCTTGGACCAAACAAGAGGACAAAATGTTGCTCAAACTTGCTAAAGGCCAAGTACATCTTAACTGGAATCTTGCTGCCCAAAGTCTTCAGACCAACAGAACTCCACTAGAATGTTTTCAAAGGTACCAAAGAAGTCTGAACAGGGACTTTGTCAGAAGTAAATGGACTCCTGAAGAAGGCAACCAACTCATTGAATTGGTCAAGACATTTGGTGAAGGAAACTGGCAGCGAATTGCTGATTTCATGGAGGGTCGTGTTGGTGAGCAGTGCATGCATCGATACACAAAGGCATGCAAGCCAGCACGAAAGGGGAAATGGTCAGAAGAAGAGAATAAGAAATTAATAGATGCTGTTGAAGCTGTTGGGACAAGCAACTGGGAAAAAGTACGTGAATGTGTACCAGGAAGAACTGGAACTCAATGTAGAGAACGTTATGTAAATGTCATCGATCCGAGGCTAAACAAAGGTGCCTGGTGCGCTGAAGAAGATGAAAAACTCTTGAATTTGATAGAGAAATATGGCGAAGGAAACTGGTCCAAGATAGCCAACGAGCATGCACTAAGGACAGATAATCAGTGTTGGCGACGATGGAACATTGTGAGAAAAAGAGAGTCCACCAACTATCGTATTAATATTCTGCGCAAGAAAAGAGAACTGGTATTAAACTTTGTTGGCAGAAGAAATGAGAAACCAACGATAACACACGAGGATTTGGATATTCAGGACATTCCTGTTGTTCTTAAGGATAAAGAACCCAAAGTTTCAAAGCCGAAAAAAGAAAAGAAGAAAATCACGGTAAAAAAACATGAAAACACGGAAGGCCTTGAAGGTACCGGCAAACGTGGCCCAAAGAAAGCACCAAAAAAATCGAGAGAGAAAAAGCGAACAAAGGAGAATGTCCCCAGCAATTTAAGTGACCATACTTATGCGAACTTGTCATCAGAAGTACCAGGGACCAAATCTGGAAAGGGCCATGGAAATAAGGCACGAACGCTGAAACCCGTGTCGCTGAACAACCACGATCAACCGTCCAGCAATCACGTGGTTGAAGATTTAAATAGTACCGTGATCTCAAAAGGGTCCAGTCAAGGATCTGGTAGAGCCCTGGCCGATCAGACACCAATGGATAATGAAGTGTCCATGTGTTCGGGCGAAAACCAAGCTGAGGATGTAGTATGTATTTCCAGTGACGAGGAATGGCACGATGACAGTCTTTCGATTGACGTAGACACTTTAGGCACCAGGGCAAGTGCGAGGAAGACAAACAAGAACATCAGTTATACCGAGAATGAAGAAGTGGACGTCAGTGTTGATGAAAGTGTGGCTGACAAGAACGAAGGAAACAGTCAAGAGGTTCCACCTCAAGGTGGCACTATAGAACATTCCATGccaaagcccatctcaaagaagcgaggtccaaagccaaaggaaaagacagcaaagcccatcgcaaagaagcgaggtccaaagccaaaggaaaagacagcTAAGTCCAGTGGCAAAGTATCTGGGAGAACAAGAGAGAAAGAGCGTGATGGAAACTTTGTGTTTCTAACGATTCAATCTTATCCCAGCAGCCTGAGACGAAAGGCCAAACGAAATCAGCAACCACccccaagcactacccctacgcgaagcatgattgttgatacagcaagtaacttcagcagacaaaaagccccaagcactacccctacgcgaagcacaattgctgatacagcaagtaacttcagcagacaaaaagccccaagcaccacccctacgcgaagcacaattgctgatacagcaagtaacttcagcagacaaaaagccccaagcactacccctacgcgaagcacaattgctgatacagcaagtaacttcagcagacaaaaagccccaagcactacccctacgcgaagcacaattgatgatacagcaagtaacttcagcagacaaaaagccccaagcactacccctacgcgaagcacaattactgatacaacaagtaacttcagcagacaaaaagAAGTCAATATGGTGACTCCACCAATAATGGTTGGTACTGTCCAGCACACTGGGGGACAGAAGAGCGCTTCTAAACGAAGCAACGTACCATCTCTGACGCCAAAGATATCGACTACCTCTGCTGTTCCAAATCAATATGTTGCAGGATTGTCAAACCAGGAAAATGTCGCACCGTTTTCTTTGTTGCTCCAGGCTTTTAAAATCAACGTTGCAGCCGTTTTACAGAAACTGAACCCGGGAGCCATCTCATTATTGCCCTCTACAGACCCAAAGAAACATTCTTCCAAAATCAGCGAAACACCACCCGCGTTTTCAAATAGAGCTGCAGTTGCTGCTCCAGATGCTGCAGtaccaccatcaacagcgtctacgtcacagccccaaaagggcacagaagcaccaacaccaacagcgtctacgtcacagccccaaaagggcacagaagcaccaacagcgtctatgtcacagccccaaaagggcacagaagcaccaacaccaacagcgtctacgtcactgccccaaaagggcacagacgcaccaacagcgtctacgtcccagccccaaaatgacacagaggcatcaccaacatcagtagcgtctacgtcactgccgcaaaacgacacagcaatactaacatcagcagcatctacgtcacttacccaaaaggaaacacgaccatcgacagcgtctatgtcactgacacaaagggacacagatgcaccatcgacaacgtctacgtcacagccccaaaaggagacagaaataccaccatcgacagcgtctacgtcacagccccaaaaggacacatatataccaccatcgacagcgtctacgtcacagccccaaaaggacacatatataccaccatcgacaacgtcacagccccaaaaggagacagaaataccaccatcgacagcgtctacgtctacgtcacagccccaaaaggacacagaaataccaccatcgacagcgtctacgtcacagccccaaaaggacacatatataccaccatcgacaacgtctacgtcacagccccaaaaggagacagaaataccaccatcgacagcgtctacgtcacatcaccaaaacgacacagaaataccaccatcgacaacgtcacagccccaaaaggacacagaaataacaccatcagcagcgtctacgtcacatcaccaaaatgacacggaaataccaccatcgacaacgtctacgtcacagccccaaaaggacacagaaataccaccatcgacgtctacgtcacagccccaaaatgacacagaaataccaccatcgacaacgtctacgtcacagccccaaaaggacacatatataccaccatcgacaacgtctacgtcgcagccccaaaaggacacagaaatGTCACTGACCCTAAGGGACATAGATGCACCACCAACATCAGTGATGTCAGCAGTTTCTACGCCACTACCCCAAAACGACAAAGAAGTATCAATGTCTACGTCACTGGCCAAAAAGGTCACAGAATCACCAGAAAGTGAGGAAATTTCTAGGGAATTGCGATCACCATCTAGACGAAAGTCAACTACACCAAGAAAGAGGCGCTCTGCACCTGATGAATTGGGCTCACCCAAGTCACCGAGAAGAACGCCTTCACCAGAACCATCAAAAAGTCCATCTCCTCAAAAAAGGTTATTTGAAACGAGACATCAAGATAGTGCGACGCCGAGGAGTGCAGTGCTAGATGAAGAGGAACGAGATGAGTTGTCAGATAGAATAGATAATTTGATCCAAGACAATCAAGAAATACTCACGACCAACAAAACCAAACCACACAATCTATTGACTCTACGATACTTTGGAACGCCGACCCCCTTGATCCCTCCACTTCCACCAAATGTAACGACATTAAAAGGCATTAGGAACATACTAGCCACGAAGGAACAATTGCATCGGCTAGCCTTGAGGACAACTCTGACAACTTCTCCCAATGCAGTGAGGAAATCGTCACCAAGTAAGCAAACAGCTAGCGCGGGAACACGTGCAGGCCCACGTAGTAGTGCTGCTGTTGCTTTGAACACTTCTAGTGTCCCATTTGAAACTCTAGTGAGAACTAGAATCCATTCAGAAAGCAGTACAACGTGTAGTATGAGTTACCAGGCCACTTCGATGTCACAAACAGCAAGTCCAGCGAGTAGGACCAGGGCAGCCACAAGTGCTGTGACCATGTATCCATCAACAGATTCGAGTAATATTCCAAATTCTGTTGGTAATAAAGAAGGCTCCTTACAGAATGCCGTGTCTTCGGATAAGAACGACAGCAATGCCACCATCTCAGAAAGCATGACCTCGTCCAATGACACAGCTTTCAAACCTCCTTCTCAAAAAGTAACGAATACACATTTCGTGATTGGTAGTGTTGAAAAATCAACCTTATTAAGTGAAACTGAACAACTATCAAACACAACTAAAGAAGCAGCATTAAATTACCTTGAAAGTCCATCAGCTACGACTGAAAAAACCGTGACGGTTTCTTCGAACGAAAAACAGAATGGTGAAAATCAATCTGGAATCGGAACTGAGGCTACACTAAATAGTCGTAGAGGAACCAATATGTCACAAACCCCACCAGTCACAAGGCTTGATATTGACTCCCTTGTAAAGTTTTCTTTATATAGAAAAACTCCAGAATACCAGCTTCTTTCGGCGCGGTTTCAAAGTCTTTTCCTTTGGCCAATCCTTATGTCTAAACTCCCTCTTACTGGGAAGGTGCCAAGTACGTTTCGTAAAGGTGCGCGATCAGCCCAATCCGCGACAGTTCGCAAGGGATCAAAGTCATCATCTCGTAATCAATATGTTGTACCCACTGGTCAAAGTTCAACTGATGCTTCTGGGTCCACAAACAAAAAACACACAAACCGCAGTCGAAAGACAAATGAGATCCCTAATGCAAAGTCCTCAACAACAAACAATAGAAATAGTAGAAAACGAACCGCAGGGTGCTCTCCTGCTAAAATATCGCCCGATGAAGGAAATGTTTCCAAAAAGAAGAGAAACGTAGACGAGCCCTCAAGTGATGTAATTTGTGACAGCAATCATAGCGTTGTTGGTAAAACAAACAAGTGCCTCACAAAAGAGTCTTGTTATAATGACCAATGTGCGTCGAGTGTAGTTGGATCAAGAAAGCGACCCCATCAGACAAGTCCGCTAACAGTAAATACCACTACTGCTATTGTGACGGGAACAGCACACCCCTCTACCGAACTTAGCTCAGACGAACTAAGTACCGAAATTCAAAACGGTCCATCGTCGTCTAAAATGAGCAAGCCCTCGTTAACACCGAGCAGTGCGGCAGTTGAAGAGAACACCAGAACGTCTATATGA

Transcript

alvinactis_v1_g9760

Protein

alvinactis_v1_g9760

MKFAKISGIPRASDKPNDERALEKGAKSGPNELKPLPEQKNTTSNTPEIVLDDKDISVTHATHSVGPIQTPSEWPLLGKWSSVSKMSQSAENSPVPSPGRPDSTEGSKSTFSKGRKRKKAYKDTNAPKAPLTGYVRFLNEHRERARNQNPDLPFHEVTKILGNMWTQLPVPQKQLYLEEAEKDKERYMKELEMYQQTDAYKAFMSRQKALRKESDSVNGTADSQGGNDDTDNLLCKPCNMFFNSPHNKREHLLGKKHNMNLMEYAEKEKQELKEKSAPVPVKKEEKETSEESFPVDGDIPIFTEEFLNYNKVRENELRRLRKTNTEFEEQNAILSKHIENMKKGIEKLENEADEQQKEITILEKHLRKLRQVLRNKLSELSIAGIEETRNTDSSVDKFVGRLHQSIQANPKENSELVTKIKGLISSIDYPNPLLNFDSEPEEFDRFHLIDDIQRINLALGADSDDASEEEEDEDEENEDYSEENSSKFSHFKASNLTTTKVSDSDDIHVLELPSTFPTDSSSMVHIETPTYTELVTRYTSISQQNGEDIIANGCYSNQEATQVAGPSGYLGNQISNQEPGQSSLLNSLRGEPLHTELPSNNLSRWTVEHELYNFATVQQGFNDGSQEHSVSYTVNKLSVLDKEVLQECLARNREYQSQILKDLRIIESSIVENKKKQLNLAQVRYNDDMDDEDSVLPPLPTLCKFSFPYFKGSNDQGPPDNEDARQNRRLMAISAYEQKPRAWNEKEKGILTEGVRMQNLKIKLAPLLMRLKDLESRRGVNLDEVENLKQQINRIKDTPPKSLEENLEGLDWDKLSTEYLTRRSAMECKLQWCHFGHPRVNRKSWTKQEDKMLLKLAKGQVHLNWNLAAQSLQTNRTPLECFQRYQRSLNRDFVRSKWTPEEGNQLIELVKTFGEGNWQRIADFMEGRVGEQCMHRYTKACKPARKGKWSEEENKKLIDAVEAVGTSNWEKVRECVPGRTGTQCRERYVNVIDPRLNKGAWCAEEDEKLLNLIEKYGEGNWSKIANEHALRTDNQCWRRWNIVRKRESTNYRINILRKKRELVLNFVGRRNEKPTITHEDLDIQDIPVVLKDKEPKVSKPKKEKKKITVKKHENTEGLEGTGKRGPKKAPKKSREKKRTKENVPSNLSDHTYANLSSEVPGTKSGKGHGNKARTLKPVSLNNHDQPSSNHVVEDLNSTVISKGSSQGSGRALADQTPMDNEVSMCSGENQAEDVVCISSDEEWHDDSLSIDVDTLGTRASARKTNKNISYTENEEVDVSVDESVADKNEGNSQEVPPQGGTIEHSMPKPISKKRGPKPKEKTAKPIAKKRGPKPKEKTAKSSGKVSGRTREKERDGNFVFLTIQSYPSSLRRKAKRNQQPPPSTTPTRSMIVDTASNFSRQKAPSTTPTRSTIADTASNFSRQKAPSTTPTRSTIADTASNFSRQKAPSTTPTRSTIADTASNFSRQKAPSTTPTRSTIDDTASNFSRQKAPSTTPTRSTITDTTSNFSRQKEVNMVTPPIMVGTVQHTGGQKSASKRSNVPSLTPKISTTSAVPNQYVAGLSNQENVAPFSLLLQAFKINVAAVLQKLNPGAISLLPSTDPKKHSSKISETPPAFSNRAAVAAPDAAVPPSTASTSQPQKGTEAPTPTASTSQPQKGTEAPTASMSQPQKGTEAPTPTASTSLPQKGTDAPTASTSQPQNDTEASPTSVASTSLPQNDTAILTSAASTSLTQKETRPSTASMSLTQRDTDAPSTTSTSQPQKETEIPPSTASTSQPQKDTYIPPSTASTSQPQKDTYIPPSTTSQPQKETEIPPSTASTSTSQPQKDTEIPPSTASTSQPQKDTYIPPSTTSTSQPQKETEIPPSTASTSHHQNDTEIPPSTTSQPQKDTEITPSAASTSHHQNDTEIPPSTTSTSQPQKDTEIPPSTSTSQPQNDTEIPPSTTSTSQPQKDTYIPPSTTSTSQPQKDTEMSLTLRDIDAPPTSVMSAVSTPLPQNDKEVSMSTSLAKKVTESPESEEISRELRSPSRRKSTTPRKRRSAPDELGSPKSPRRTPSPEPSKSPSPQKRLFETRHQDSATPRSAVLDEEERDELSDRIDNLIQDNQEILTTNKTKPHNLLTLRYFGTPTPLIPPLPPNVTTLKGIRNILATKEQLHRLALRTTLTTSPNAVRKSSPSKQTASAGTRAGPRSSAAVALNTSSVPFETLVRTRIHSESSTTCSMSYQATSMSQTASPASRTRAATSAVTMYPSTDSSNIPNSVGNKEGSLQNAVSSDKNDSNATISESMTSSNDTAFKPPSQKVTNTHFVIGSVEKSTLLSETEQLSNTTKEAALNYLESPSATTEKTVTVSSNEKQNGENQSGIGTEATLNSRRGTNMSQTPPVTRLDIDSLVKFSLYRKTPEYQLLSARFQSLFLWPILMSKLPLTGKVPSTFRKGARSAQSATVRKGSKSSSRNQYVVPTGQSSTDASGSTNKKHTNRSRKTNEIPNAKSSTTNNRNSRKRTAGCSPAKISPDEGNVSKKKRNVDEPSSDVICDSNHSVVGKTNKCLTKESCYNDQCASSVVGSRKRPHQTSPLTVNTTTAIVTGTAHPSTELSSDELSTEIQNGPSSSKMSKPSLTPSSAAVEENTRTSI*

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF12874	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF13921	Myb_DNA-bind_6	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005	Domain	SANT/Myb domain	Interproscan
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR017884	Domain	SANT domain	Interproscan
IPR017930	Domain	Myb domain	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR051575	Family	Myb-like DNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46621	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001006	Molecular Function	RNA polymerase III type 3 promoter sequence-specific DNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0019185	Cellular Component	snRNA-activating protein complex	Interproscan
GO:0042795	Biological Process	snRNA transcription by RNA polymerase II	Interproscan
GO:0042796	Biological Process	snRNA transcription by RNA polymerase III	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-