Gene detail

Detailed information of alvinactis_v1_g97 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g97	DEP DOMAIN PROTEIN	chr_1	1929775	1941075	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g97

ATGGACAACAACGCAACTGTTCATTCTTCAGCGTCTTGCGACATCGACAACCTCTTCCCTGCCCTGGTTGAATGTTTTGTCATCATTCTCTTGGGTTATGGTAGTGGGAGACTTGGACTCATTTCCACTTCACAGAGCAAAGGGATTGGCAACTTTGTTTCCCTATTTGCACTACCAGCTCTTCTTTTCAAATCAATGGCCGAGCTTGACTTCTTTGCCGTCAACTGGAGATTTCTGGCTGCTATTTTGATTTGCAAAGGACTGGTTTTTGGCACAGTTGCTGTTTTGACTATCATTCTCGGGAAACCTCAGAAGTATGGGAGAGCTGGTATTTATGGCATATTCTGTACACAGTCCAATGACTTTGCCTTGGGGATTCCTCTAATGAAAGCTATGTATAGTAAATCCATGCCACAGTTTCTCAACTACATCTACCTTGTTGCACCTATCACCCTGGTTATTCTCAACCCTATAGGCTTTATACTGTTGGAGTTTAACAAGCACCATGGCAGTGGAAAACACATAGAAAAGCGTCATTTGACAATAGCAATCATCAAAGGCATCATCACAAATCCTATTGTCTTCATGACATTTATCGGCATTGTTGCTAACTTTATCCTTCACCAAAAGATTCCAGCAATAATAGATGGATTTCTTACAGTCCTTGGTTCAGCATTCTTTGCAAGTGCATTGTTTTTCCTTGGACTGAAGATGGTTGGGAATATGAAAAAACAAATGGGATATGCACTGGTTGTACCTTTCCTTCTTATTTGTTCAAAAATGGTGTTACTTCCATTATTGGCACGCGAGTTTATCCAACTCCTTGATGTAGGGGGATCTAACGAAACCCTGACAGATGCATGGAGCATGTTTGGTTTCCTTTATGGTACAATTCCAACTGCTCCAACTGTTGTTATCTTTGCTTCCAAGTTTGGAATAGAGGAAGAAAAGATAGCAACAAGTATGGTACTAGGAACATTCCTTTCAGCCCCAATATTGTATACCTCGGCAAAGATGATTGCAACTAAGTACACCCCTGAAGTTCACTTGTATTATCACAACACTATCAAAGAGACAATACAAGATTCTTGTGGAATCAGTATTCCTTTTGGGCTTTGGGTGATAGTAATGTTTATCCTTGGCAGACGTTATAAAGTACTTCCACAAAAATATACATTGTGGTTAGTTGTATCCCAGGTGGCTTTTGCAACAACTTCACTTTTGTGTGATGTAAGTTCTTCAATAAATTGGCATTTGATGTCATTCATCCTGGTCAGCGTAACTGGTCTCCTTTGCCGTGGCTGGACAGCAATGGTTGCATTTAGCTTGTGTCTTGTTCGATGCAAAGGTGGTTCGTTAAAGACCTGGCAGCCTTGGATTTATTTTTATGCAATTGGTCTCTCTGTTGTATTGACTGGCATCAAACTGTGTTTTGTGGACCTCACACAGCCAGATGGCGACACCCAAGCATATATAGCATATGCTCAGAATCAGATGCCAGTTCTAGTGGTCCAGGTTATTGCACTCGCCCTGGATCTGGCGATAATCATTTACTCACTTGTGCGACTGCAGCGCTGTGACAAATACTGTAAATGTCCTTCAGGCATAAAAGGGGCACAATCTCCACAGCCTGCAAAACATGAAAAGAGGTGCTATAGTTGCAAAGAAATGGAAGGATCAAATGTTTGCTCATTAGATAGTGATGCTACACAATGCTGTGGTGATATCCAGTCACCAGCTAAAGCCCTTGATATTGAAAGCCTTGATGAAAGCACTTGCCTTCTTCCAAGTGGTCAGGACTTTGTGAAATATGTGGAGGGTCAATCAAGTAAAAGTATTGAGATGATTGAATTGGAGTTGAGCATGGAGTACTATGATGGAGATAAACATCAACTTGTGCAACATGTCATCATGATTCTCTGTTTGGCTTTCTCAATTTGTGTGGGTTTGTTTATGTGTGTGTGGTACTTAAGCGGTGAATCAAGAGACTGTGGTTTGTTTATTGGAATGAGAGTACTTGACACAATCTTGTTGTTTGGACAGGGTTTCATTGTATTTGCTTGTTTTGGGATGGATAAGCAGCTTATCATCATACCATTTCTTAAACGTTTGCGGCGATTCTTTTATGGGGCTGTAAAAGTAGTTCTACCAGCGATGGATGAACTCAGTTCAGAAGAGGTTCATTTGTGTCAGCAATTTGTAAAACATCACAAACAAAAATGCAAAAGAGCCTTGGTTGGTAAGAAAAGACATCGTCTTCGTACCTATGACAACGTATTCAGTGGTGAGCAGTTAGTCAGCTGGCTTACAGATCTGGGATTGGCTGATGACCGTGTCTCTGCTACAAAGTATGGCAATACCTTGCTTTGTGGACGTATCATTGAGCACGTGTCCATGGAGCATTTTTTGTATGACTTGCCTTACTTTTATCAATTTTGCTAG

Transcript

alvinactis_v1_g97

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00610	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan
PF03547	Mem_trans	Membrane transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000591	Domain	DEP domain	Interproscan
IPR004776	Family	Membrane transport PIN-like	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR051832	Family	Regulators of mTOR signaling and Rac activation	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22829	DEP DOMAIN PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0023051	Biological Process	regulation of signaling	Interproscan
GO:0030514	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-