Detailed information of alvinactis_v1_g9497 in Alvinactis idsseensis sp. Nov. Gene info
Gene IDAnnotationChromosomeStartEndStrand
alvinactis_v1_g9497THO COMPLEX SUBUNIT 6 HOMOLOGchr_42557024625581708-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF12928tRNA_int_end_N2tRNA-splicing endonuclease subunit sen54 N-termDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR024336DomaintRNA-splicing endonuclease, subunit Sen54, N-terminalInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR036740Homologous_superfamilytRNA intron endonuclease, N-terminal domain superfamilyInterproscan
IPR042626FamilyTHO complex subunit 6Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR44411THO COMPLEX SUBUNIT 6 HOMOLOGInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000213Molecular FunctiontRNA-intron endonuclease activityInterproscan
GO:0000346Cellular Componenttranscription export complexInterproscan
GO:0000347Cellular ComponentTHO complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006388Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligationInterproscan
GO:0006406Biological ProcessmRNA export from nucleusInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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