Gene detail

Detailed information of alvinactis_v1_g7831 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g7831	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	chr_4	1928659	1968615	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g7831

ATACAGCGAGGGTACTGTACCATGAAGTCTACACGAAACACCAAAGCGTCTCGTCGAAGCAAAGGAATAAACCCTTCCAACAAAAAAAATGCTTCAGATGCAGGGCTTAGTCCTTCTAAACGTCACAGGGAGAAGCTCAACTCTGTCATGGATGAACTTTGTGATCTACTGCCTTTATCTAGAGATGCAAAAACAGGTCTAGACAGACTGTCAGTTCTCAAGCTGACTGTCAGTTATTTTCAAACCCAAAATCTTATGATACAATCTGGTAATGACAAAAGTAAACTGCGCATGCCAAAAAGAAGTAAAGATGAACAAGTTGAAGGATTGAATCTGAGTGAACTGGCTCTTCAGGCTATTGGAGGTTTTTTTGTGGTTCTCACTGAAGATGGTGTTGTTTACTATATCTCAGAGAATGTCAAGTTTTACCTTGGGTACCCTCAGACCCGGCTAATGCACCAAGACTTTTTTCCACATGTCCATGCTGATGACATACAGGGTCTGAAGGCTTGCTTTGACAAGAGTTTGTCTGAGAATAATGACGGCAGATTAACAGGTGAACATCAGGAGTGTTTCTGTAATATTCGATGCCATGCAGGAAGATTATCAAGTCACGTCAGCCCATTTTATTACAAGTGTTTCAAGTTTAAAGGCCACCTAAAAATTCTAAAGAACAAGTCAATAAATGGAAACAAGAATGGTTTCTTTGCTCTGTGTTCACCAGTCAGCAGACAGATTGATGTCTTTCGACCATTAACTAACAATGTGGAGAAATATACGTGTAAAATGGatgcatcaatgaacaatctagaagtagatacaagAGGGCTGAAGTTCTTAGAATTGGGAGAGAAAGACCTTGCTGGACGCTCTTCATACTGTTTCTTTCATCCAGACGACCTTGGTGGAATGGCTTTAGCTCATGAACGTTTGTTACGTGACTCAAAGGTTTGCACAACATTCAGAGTTCTTAAAGGAAGTGGCAAATGGCAGTGGGTTCGTGGACGAGCTTACTCAATCATTAATCATGGCAAAGTTGAGGGAATGGTTTCCAAAAACCTTTTCTTGAGTGACGAAGAGGGTGTGTATTTTAAGGAACAAGACATGAAAGAATTACAAGAGTGGAAAGTGCGCCAAACCATTGCTCTCCCCTGCTCTCAACAGTTCGGTTCGTATGAGTCCTCCTCTGTACATAGTGGCAGTCTGAGCCCTGGGAGCGAGGATTTATCTTTTCATTCCTTTCCAATTGCAACACTATCGGATCTCCCTTCACAAAATAACCCAGTGATTTCATCGCCGGACGATATCTTCTGCAGACAGGACCAGGACTGTGCATTCGTCTTTCAACACAAGAAGATCAAGTCGTCTTATCTAGTTAATGATGAACCATTCAAGGACGACATGGACAGTGACACAATGCTTAAGATCATTAAAGATATGCAAAGTTCGCTGATTGATGGAACCAATAGCAGGATGCCATTTCTTGCGGCTCAGTCTGATGTTGACTTGCTTACTGGAGCGCCTTTTAGTGACATGGTCTTACCAGACAATGACTTCCTTGGCACTTGTTCCAAACCTTCTACTGGTCAAGATTTGGGTTTCGTTCAAGACTTTGGTAGCCAGATTGAAGAGGCGGTTTTTGTTCCGGGCAATCACAGCGGATCTCATGGCTTACATGGTGTGCCTCAACACTCTAACGGCTTGATGCAGTTCAATGAAAAAGTTGCATTTCAAAATAACACAACTGAGAACACTTTTCGAGACAACGAGAGAAAAGGTAAAGTTTCATCGTCTGTGGTTCACATGGACGAGTATTCATTCACTGATTTTGTTCCACTTCCTTTGGTTGAAGTTGAAAGTATTTTATCGAATGACCAATGCACATACGCAATGACGTCAAATAGTGCGTCATTAACAACATACGGCCTGCCACCGCGTCAACCCATGACGGGCTACCCTAGTCACCAAGCATATCACACAAACAGCTTCAAATCCAATGAACAACTGCCGCAATGTGTTGGTGGAGGGTACGAATTACATCCATCGATCAATACGCTTCCTTATCAGGATATAATGTGTAAAGACAATGGGCTACACTACAAAGCCTGCACTGAACCATTCAACGCTCATGCTGCGGGTAGCGAGAAATTACCATAA

Transcript

alvinactis_v1_g7831

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08447	PAS_3	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR013655	Domain	PAS fold-3	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR050933	Family	Circadian Clock Transcription Factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23042	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034751	Cellular Component	aryl hydrocarbon receptor complex	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-