Gene detail

Detailed information of alvinactis_v1_g7439 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g7439	TRANSLATION FACTOR	chr_3	29879350	29902651	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g7439

ATGGACTTGGAGGTCGTCATTAATCTTGTGACTTTTGAAGACAGGCTGGATGGTGTGGCCAATCTTCTTGCTGAGGGTGTTTACCACATGGAAAACATTCAtgacagtttttctgtcctgaaaaagtgccagggaaagttggactCACATCAGTTTATGTATAATCGTGGCAATGATGATCAAAAGCGCAATCTGTTTGGCAATTACATGGAGGGAAGGTTTGGCAGTGTagaagaagaggatgagcagtcagaagaagaagaTCACTTGGCTCATTCGCATGATTATAGAAGACCCCAACTAGATCCCATTAGCCAAGCAAAACTGTCGTCTTGCTTGGATCAACTCCAGTCCATCTTGGGTGATGATTGTCATGAACCCACAGCAGTTGACGCAATACTTAAGTACAATTTTGATGCTGAGAAGGCTTTGAACTACATATTTAGTAAAGAAAACAGCAAAGTTGACAGTCGGCCATCAAAGAAAGCAGACACCAAAGTATCCAGTGAATCCACAGTCAAGCAAAGAGTACAACCTGAACAGTCAAAAGCAGCTGTGTCTCGTCCAGCAGATGTTACAGGAAACAAACCCAGTATGTCTAAACCAAGTAGTACTACCACAAGCAGCCTGTCAGCTAATGTAGTGGTTGGGTTTTCTACACCACCTCAAAGTAGATCAACAGCCAGCTCTCCAGATCAACTACAAGATATGACTAGAGTTGATGTCCAACCCAAGACTAAGACTACAAAGCAGATTGACACTAAAGCAGAGTATGAAAAACGTCAGCAAGGAAAGCAAATACTAAATCTTGTTGTAATTGGTCATGTTGATGCGGGTAAAAGTACTCTAATGGGTCATCTATTGTACCTTCTTGGGGATGTCTCCAAGAAAGCTATGCACAAATATGAAAATGAATCCAAGAAAGCTGGAAAGGCTTCTTTTGCCTATGCGTGGGTGTTAGATGAGACTGGAGAAGAAAGAGAGAGGGGTATAACCATGGATGTTGGTCTTACACAGTTTTCAACCAAGAATAAAGTCATTACACTGATGGATGCCCCTGGACATAAAGACTTTATACCAAATATGATAACAGGAGCAGCACAGGCTGATGTTGCTATCTTGGTTGTGGACTCAAGTACAGGGGAGTTTGAAGCAGGTTTTGAGTCTGGTGGCCAAACAAGAGAACACGCTCTACTTGTGCGCTCACTGGGTGTCACACAGCTGATTGTTGCTGTCAATAAACTTGACAACGTACAATGGAGCGAAGAGCGATATTTACACATCACTGGAAAACTGAGATTATTTCTCAAACAGGCTGGTTTTAAGGAATCTGATGTGGTGTATGTGCCATGTAGTGGACTGTCAGGTGATAACCTTGTCAAACAGTCTTCAGAAGAAAAGCTATTAAAATGGTACAAAGGTTCTTGTCTTCTAGACAACATAGACAGTTTTAAGACACCTCAACGTGATATGGACAAGCCTTGGAGATTTTGTGTTTCCGATGTGTACAAAGGTGTGGGTGCAGGCTTTAACCTTGCAGGCAAGATGGTTGCTGGTAATGTACAAAATGGTGCTAAAGCATTAGTAATGCCTGCAGGAGAACAAGGACTCGTTAAAGCTTTGGCAATTCATGACCAACCCAACTCGTGGGCATGCGCGGGAGATCACGTGACCCTGACCATTGCAGGTGTAGACGCAATGCATGTTGGGGTTGGTAGTATACTTTGTGAACCAAGTTCCCCAGTCAAGAGTACCACCAAGATGAGGGCACGAATCATTCTATTTAATATTGACATTCCTATAACAAAAGGATTCATGGTATTGTTTCATTACCAAGCCATGAGTGAACCTGCGACGATTAAGCGATTACTAGCACTTCTCAGTAAAAGCACAGGGGAAGTTGAAAAACGCAAGCCAAGATGTCTATCCAAGAATTCTAACGCTGAAGTAGAAATCCACACAAGTAGACCAGTCTGTGTTGAATTATATAAAGACTATAAAGACCTTGGCAGGTTTTTGCTACGATACGGCAATGAAACCATTGCTGCAGGCGTTGTTACACAGGTTGACCAACTAGTAACCAGTCCTCGACGTTCATTCCATGGACGCCATGATGCCTGTTCCAGCTTTCTTCTGGACCGTCTTATGCATTATGAACAAGTAGAACCATCTTCTTCAGATGACGATGACACAGCATCATCATCAGAAGCCAGTGATGACGGGCCTAAGAGTATGTTGGGTGATTCAACTAGCCATAGCAATAAATGCAAGAAATCTCAGTTAGTCAATCATATTATGCCATCAGAAAACCTCAATGCTTTTTTAACATCAAAAAGTAGAGAAGGCACCAGTAGAATGTCTACAGGTGCAAGTCAAGCATCATCAAAATTAGTTGCCTGTAAATTCACTAGTAATGGGAAGCAATGTCAGGAGTTAGTTAGCAAGAGATCCAAGTCAGGGTACTGTAGTGCACACAGGACAGTCGTCAGGATTACTAAACAGGGAATCAGTGGACCCAGTAAATCCAGTAGAACTGCAACTACTGACTCAACCAAAGATGATAAAGCTGAGCAACTGGAGAGTCTTCATTGCTTGTCTGAGTCAAGTACTGCAAGCCAAGTGCCACAAGCAACTGAACAACTTCCTCATGATGTCTTTAATATAGAAGATGAAGAACAAGAAAGTGAAAATGAAGACTCGACAGGGTCGGCCAGTTTCCAGGGCAATATTTATGAGGGAGATGACGATTTAGTTATTGATTTACCAGAGTAG

Transcript

alvinactis_v1_g7439

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF03143	GTP_EFTU_D3	Elongation factor Tu C-terminal domain	Domain	Interproscan
PF08938	HBS1_N	HBS1 N-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR004160	Domain	Translation elongation factor EFTu/EF1A, C-terminal	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR009001	Homologous_superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Interproscan
IPR015033	Domain	HBS1-like protein, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR037189	Homologous_superfamily	HBS1-like protein, N-terminal domain superfamily	Interproscan
IPR050100	Family	Translation factor GTPase superfamily members	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23115	TRANSLATION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006412	Biological Process	translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-