Gene detail

Detailed information of alvinactis_v1_g655 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g655	TRANSCRIPTION INITIATION FACTOR TFIID	chr_1	11111960	11123438	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g655

ATGGCGGCCAATGCAAGCACAAGTGCAAGCTCCTCGTCTTCGACTTCTAAGCCGAATTCAACCGATAAAGACAAAGAAACGTTGAGAGCTGTACTTCGATTCTTAAAGAATAAAAACTTAACCGAGACAGAGAAAATCTTTCGTCAGGAAGCAAACTGTTTAGGGAGTGATAGAGAATTAAACCTAGAGACTTCACTTGATATAGATACTGACATATCATCCGTGTTATCTGCTTACAATAGTGAGGCAGATCCATCAAGATATGAAGAATATTACACCATTCTTCAACATTTTGTTGAAAAATCACTAGACATTTATAAGCCTGAGCTAGCCATGGTGTTGTACCCATTGTTTATACACATGTATTTAGAGCTTGTCTACAAAGGTTTTCAAAGGAATGCTCAATCATTCTTCTCCAAGTTCAGAAATTCCCAGGAAGACTACCATGAGGGAGATATTGTACGATTATCATTAATAACCAAAAGAGAAGATATGGATAAAAGTGAATTCATGGCAATCCTTAGGAGTAACAAATTTGTGATACGAATGTCAAGAGACACTTATCAAGTGCTGAAGAAACACTTACAGGACACTCAATTAGAAACACTCTTGATTGTCATCCAACAACATCTGCACTTTGATGTGTTTGATGGACGTCCAAGAAACAAGCAGTCTATAGATGCTACATCAGGGGGGATTACTGGAGAGGCAACTTTTGAAGCCAATAAAACCAAAGTACTATATGGCCTGCAGCCTGAACCAGACCTTGGTATTACAATAGAAGATGATAACGAGGAAGAAGAAGATAAAGATAAACCCAAGAAAAAGAAGGCAAAAAAGGAAAATGGACCAGGAAGAAAAAAGTTTGAGTTCAATCCAAATGCACCACCACTCAATAGAATACCTTTTCCTGAATTGAAAGACAGTGACAAGATGCATAAGGCACAGGTTCTAAAAGAGAAAGCCAAAAGACTTAAACTTGATGCTGACACTGTTCCTTCAATATGCTTCTACAGTGTTCTGAACTCACATGAAGGAGTGAATTGTGCATCTATTTCTGATGATGCCACATTGTTAAGTGCTGGCTTTGAAGACAGTATTGTCAGAGTGTGGGGCTTGACTCCCAAGAAACTCAGAAGTCTTAAAACCCCATCAGAATTGAACAAGATTGATAAGGAAGCCGAGGACGTCATGGAAAGAATAATGGATGATAAGACCGCTACAGAGTGTCGCCGCCTTGTAGGTCACTCTGGACCAGTCTCTGCACTCAGCATCAACAATAATAACATGTACCTTCTGTCATGTTCTGAAGACAAGACAATCAGACTTTGGAGTCTGTTTACCTTTACAACATTAGTGTGTTACAAGGGGCACAACTACCCTGTGTGGGACGTCCAGTTTTGTCCACGTGGTCATTACTTTGCATCAGCATCCTATGATCGTACTGCACGTCTATGGTCAACTGACCACCAGCAGCCACTAAGGATCTTTGCAGGCCACGTGTCTGATGTCAATAAAGTTGCATTTCATCCAAATTGTAACTACCTAGCGACAGGATCAAGTGATCGGAGTGTACGCATGTGGGATATTCAAACAGGGACGTCTGTACGGCTATTTACAGGGCATAAGGGTCCAGTTCACTCACTTGCATTCTCACGCAGTGGTAGATACTTGGTTTCTTCTGgtgttgatcaacgtattctagtgtGGGACTTAGCTGAAGGCACACTCATTACACAACTAAAAGGACACAAAGATACTGTTTATTCATTGTGTTTTTGTCGAGATGGTAACATCCTTGCATCAGGTGGTGTAGATAATTGTGTCAAATTATGGAATGCCAAAGCTATTTGTAACCCAGAAGAGGAAGAGGATGATTCGCATGCAGGGATGGATAAGTCTGCAGACTATCAATTAGGATCATACTCTACAAAGAACACTCCTATACACTTTCTTCACTTCACATACAGAAACCTGCTACTCGCAACTGGTCAATTTAACCCAACATGA

Transcript

alvinactis_v1_g655

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF04494	TFIID_NTD2	WD40 associated region in TFIID subunit, NTD2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR006594	Conserved_site	LIS1 homology motif	Interproscan
IPR007582	Domain	TFIID subunit TAF5, NTD2 domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR037264	Homologous_superfamily	TFIID subunit TAF5, NTD2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19879	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-