Gene detail

Detailed information of alvinactis_v1_g6426 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g6426	4-HYDROXYPHENYLPYRUVATE DIOXYGENASE	chr_3	16095742	16128168	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g6426

ATGGCTGGAGAAGCGAGTGATCTCCAAAAACATCTGATCAGCGCTCTACTCGACAGCGGCATCACACGAGATGCGATCGTCAAAGCGATCGACTCTATGCTCTCCAAGCCGCAAGAGAGAGTTCTGCGTAAACCCAGTGAGCTGGTAGAGAAGCAATGCAAGTCGGAACCTGTGGGCCGTGCTCAGTATATGTCTGATAGTGGATCTTCTGACGGGGAAAGCATCAAGGATGACTACGCTGATGAAATTCCTCAGGTCTCGCAAAGTCCTTTGTTGAACCCCGATTCGGTTGGTGATCATTTACTCCGCATGGACCCCTGGCAAGCAGCACGTGTTATGAAAATGTACATGCAGCAACACAACATTCCCCAGAGGGAGGTAGTAGAGTCGACAGGTCTGAACCAAAGCCATCTCTCACAGCATCTGAACAAGGGTACCCCCATGAAGAGCCAGAAGAGAGCCATCTTGTACAACTGGTTTGAAAGGAAACAGAAAGAAGTTGCGCTGCAATACAGTAACCCAGGAAAACGATTGTATTCTGATGACTCTGAGTCGAGTCCATCCAAAAAGTCGAGACGGAATAGATTTAAATGGGGACCTGCGTCGACCAACTTGCTGTACAACTCTTACGAACAACAACGTAATCCTTCGAAAGAAGAAAGAGAGACCCTGGTCGTCCAGTGCAACAAGGCTGAGTGTGAACAGAGAGGAGTACCCTACAGTAACGTGGGAGGGCTGGGCCCTAATCTCGTCACTGAGAGTAGAGTGTATAACTGGTTCGCAAACCGACGCAAGGAGGAGACGTTCCGAATGAAGCTGGCTATCGAAGCTGCTAGCTACCAAGATACTCCAGGTCAAGCACTCGCTTCTCTCACCTCACAATTGCCTCCGATCGCGCCAAAAATGACGTACGTCAACACACCCACGTCCCACGTATCTTCTGCGCATCTACAACAAGCTTTGCCCTCATCAGTTCTTACGTCATATCCGGCTACGTCATCAACGTTTCAGCCacccgtgaaccacactatggctgctggggtacccgtgaaccacactatggctgctggggtacAAGTGCTACCTGGGGTGGCTACCCTGATGCAGTCGTCGGAGAATATTGAGAGCGACGTGTTGTCGTCGCAACAAGTAATTCCAGTCATGTCGTCACAGGTTCCCGATCGGTCGATGATGTTATGCAACAACACGACGGCTGGAAGTTCACCGCAGTTCGCAGCCTCTCCTCAACTCGCTATGTCAACGATGTCACGGTCGACACACCAAATGATCCCATCAAACGCCAGCCTTGCACTCCAAGCAATGGCCAGCACCGTACGGCAGATTTCCGTCCAGCCCATTCCCATTACCACGTTCTCAAATACGCCATCTTCCATTGCTGCCAATACAACGGCTTTCATCCCGCAAACGATGATCATGACTCCAGCTTCCGTGCCTTCTGTCAATGTGAGCCACACCGCCCGTTCTCCCGTGGCAACGATCGAGCACTTGGCAACGCCGTTGCGACCGCACGAGAGCGAGCGGCATTCCATGCATAACCCAAGCCTATCCGTCCAGGACGTCAAGAAGCAAATCCTACAAGAAACGAACGACCAGAGCTGCCTATTGCAACAGGATCCCGACGACGGCGCGCAAGGCATTAATGGAGAACACGTGATACATCACGTGATACAAGCCATTTCTCACGTGGGCGACAAAGAAGAAATTGAGAAAGACTTGGCTGAGAGTGAAGCGGAGGACGCCATTGATGGATTATCATTGGCTGTCAAGATGGAGGTTAACGGAGAGAACGTCGAAGACGTCGACTCCATAGCTGAGACGGTTACCGTGGAAACCACGACTTCCGGTAAAAATACTCCAGTAAAAGAATTAAAGCACGAGAATGTAACGCAATCACCTTTACCAACGCAAGCCGTGATCGTCCGAGTGAATGGTAACCATGACGACACTAGGGagacattctatccagagatcgactaccaatactgtcttccaggtggtctacatatggggcctgggattatgcaatttttcttatggcggctaatgattctgagtACAACCTACACTGACAAAGGCGAGAAGCCTAAAGCTGGTCGTATGATCGCGTTTGATCACCTCACTCTCTGGGTCGGCAATGCCAAACAGGCAGCATCGTACTATTGTACTCGCATGGGGTTTGAGCCTATGGCATACAAAGGATTAGAGACTGGCTCTAGAGAGGAAGTGGCACATGCTATAAAACAAGATAAGATCATCTTTGTTCTTAAATCAGCTCTAGTACCAAATAATGAGCTCACAGAAACGATGGGGAAACATTTAACCCTTCATGGTGATGGAGCCAAGGATATTGCCTTTGaagtagataactgtgttggtctatacaaaGAATGTGTGAAGCGAGGAGCAAAATCAGTACGAGAACCATGGGAAGAAACTGATGATGGAGGAACTGTTACTCTTGCTACAGTGCAGACGTACGGTGAAGTCACCCATACATTTGTGGAGAGAAAGGATTTCAATGGTCTCTTTCTGCCTGGTTATAAAAAAACAATGTATGAAGACAAATTGTTGGCCAAATTGCCTCCTGGCAAGTTGGCGTTCATTGACCACATCGTTGGTAACCAGCCCAATGATGAGATGGTTGCCGTTGCTGACTGGTATGAAAAGAATTTGCAATTTCATAGATTTTGGTCTGTGGATGATAAACAAGTTCACACTGAGTACAGTTCACTAAGGTCTATTGTAGTGACAAACTTTGAAGAGACAATCAAAATGCCCTTAAATGAACCTGCTCCTGGAAAGAGAAAGAGTCAAATCCAGGAGTATATTGACTACTATGGAACGGCTGGCGTGCAGCACATTGCACTAAACACTTCCGACATCATATCAGCTGTAACTAACCTGAAGGAGCGAGGTATGATGTTTTTATCCATACCAGACAAGTACTACGACAATCTCAGGGAACGTCTTAAGAAGTCCAGCATTACGGTCAAAGAGGACTTGGATGTGGTCCAAAAACTGAAGATCTTAGTGGACTTTGATGAACATGGGTACTTGCTACAGATCTTCACCAAACCAGTGCAAGACAGACCAACGCTGTTCCTTGAAGTTATCCAAAGACATAACCATACGGGATTTGGCGTTGGAAACTTTAAAGCTCTATTTGAATCCATAGAGGCTGACCAGTCAGATCGTGGAAACTTATAA

Transcript

alvinactis_v1_g6426

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00903	Glyoxalase	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	Domain	Interproscan
PF04814	HNF-1_N	Hepatocyte nuclear factor 1 (HNF-1), N terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR004360	Domain	Glyoxalase/fosfomycin resistance/dioxygenase domain	Interproscan
IPR005956	Family	4-hydroxyphenylpyruvate dioxygenase	Interproscan
IPR006899	Domain	Hepatocyte nuclear factor 1, N-terminal	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR029068	Homologous_superfamily	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	Interproscan
IPR037523	Domain	Vicinal oxygen chelate (VOC) domain	Interproscan
IPR041735	Domain	4-hydroxyphenylpyruvate dioxygenase, C-terminal	Interproscan
IPR041736	Domain	4-hydroxyphenylpyruvate dioxygenase, N-terminal	Interproscan
IPR044866	Domain	HNF-1, dimerization domain	Interproscan
IPR044869	Domain	HNF-1, POU-specific (POUs) atypical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11959	4-HYDROXYPHENYLPYRUVATE DIOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003868	Molecular Function	4-hydroxyphenylpyruvate dioxygenase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006572	Biological Process	tyrosine catabolic process	Interproscan
GO:0009072	Biological Process	aromatic amino acid metabolic process	Interproscan
GO:0016701	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-