Gene detail

Detailed information of alvinactis_v1_g6389 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g6389	ZINC FINGER PROTEIN ZIC AND GLI	chr_3	15382611	15390334	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g6389

ATGGTTACCATAAAGGACTGTGATTTGTGTGGTCTAGTACTAGTAGTAGTATTGACGGTCATGGATCAGGACAAGCTGAAACTTTCAGAATACGAGCTGAACAGACAAAAGAGGATCAAGGAAAACCATGAATTCATGAAAAGTCTTGGTCTTCCTGTCCCTAAAACACCAAGATTACAAAGAACAACAAAAACAACCAGCAAACCAAAGAAAAAGCGCAAAGTTTTCACTTCATTAGACGAAAGTGAAAGCAGTACTGAGAGTAGTGATGATAGCGATGTGGATTGGATACCAGGAGTATCAGAAGAGGTGGCGAAGAGAAACAAGATGATAAAGAGATTTGTTCCAGAATTTCGTCCCAAAAGGAATCTACTGTTTGATTTTAACTCGAACAGTTCAAACAAGAACAAGAAAAGTAACACCAGTGGAAACGACTTTGAAGACCTTGCTGAGATATCCGAGCAGATGTTGAATGATGCCTCGTTATTTGATGATGAAGAAGAAAACGTAGAAGATAAAGCACATCACAACAGTGGCTGCAGATATCCCGTAAGATCGCGATCTATGAAAGCAAGTTACCGCGAGGCTGAAGTACCTGATGATGACCATTACCTATACTGTGAAGAGTGTCAAGATCTGTACCATGGAGACTGTCCTAATCATGGTGCCTTACAGCCTATGCCTGATAAACCTCTCTCCACTGACCACGACAACAACATACTAACAGCTGCGAGAGCATCTTTACCAGATTTCCTTGAGATCAAACCATCAACAATATCACATGCAGGTCTTGGTGTGTTCTGTAAATCTGGTGTAACTCCTATCAGAGCAAAGTTTGGGCCATACAAAGGCAAGAAAGTCAAACTTGAGAATATTGGTGATGACATGGATACCAGTTATATGTGGGAGATCATAAAAGATGGCAAGTTCAGCCACTTTACAGACGGTGCAGACGAAACTACTGCTAACTGGATGAGATTTGTCAATTGCTCACGATGCGAAAGAGAACAGAACTTGGTCTCATTTCAGTATAAAGGAGAAATCTATTACCGAAGTTACAAACACATTTCAGCAGGTTCAGAATTACTAGTTTGGTATGGTGATAAGTACGCACAGGATCTTGGGATATCTATTGACGACAAAGACGATAGCCAACATGGTACATACCAACAGCGACGGACACAAAGAGCTAGGGCATTGGACAAAACAATTCCACATAGTATAGCATCCTGTGACAACAAAGAACAGAACTGTCCATTGTGTAGTAGGACGTTTGAAACTGCTAAAGAGTATGATGAACATCTACGGACACATTGTAATGGATCGGATCTTGTTTGTCCAGTTTGTAAGAAAAAGAGTACACAGAAGAGTAATTTGATGACACATTTACGCACTCACTCAGGCTATTGTccatatcagtgtaagtactgtaacaaggcatttatacagctcggagacctgaaaaaccacgagcgtattcatacaggtatcaaaccatatcagtgtaagtactgtaacaaggcatttatacagctcggagacctgaaaaaacacgagcgtattcatacaggtatcaaaccatatcagtgtaagtactgtaacaaggcatttacactgctcggtacccttaaagaccacgaacgtattcatacaggtatcaaaccatatcagtgcaagtactgtaacaaggcatttacacagctccatcaccttaaaggccacgagcgtattcatacaggtatcaaaccatatcagtgcaagtactgtaacaaggcatttacacagctccatcaccttaaaacccacgagcgtattcatacaggtatcaaaccatatcagtgcaagtactgtaacaaggcatttacacagctccatcaccttaaaggccacgagcgtattcatacaggtatcaaaccatatcagtgcaagtactgtaacaaggcatttacacagctccatcaccttaaaacccacgagcgtattcatacaggtatcaaaccatag

Transcript

alvinactis_v1_g6389

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF21549	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214	Domain	SET domain	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR044417	Domain	PRDM7/PRDM9, PR/SET domain	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan
IPR050329	Family	GLI C2H2-type zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19818	ZINC FINGER PROTEIN ZIC AND GLI	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0042054	Molecular Function	histone methyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-