Gene detail

Detailed information of alvinactis_v1_g5107 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g5107	BASIGIN RELATED	chr_2	36115898	36136986	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g5107

ATGCCGACGAGTACTTGGACGACAATTTCTCAGAGTGGAATCATATTTTTGATCGTTTTGAATACTGTTAGCCTCGTCAAAGCACAGGGATCAGTCGCAGCTTCAGCCATACGTGTCCCCTCGGTTGGAGAGTTAGAGAATACTCTTATTTGCCAAGGAAAGATGAGGAACCTATCCTGCACAAACGAGTCAATGGTGATGGTCATATTCGATGCACAGTACGGCCGGACAGAGTTTGGACAAAGAATATGCCCTTATAAACCTTACAATGACAAGGAAGATAAAGATGACCAAACTACTAACTGTGAAATAGAAGTAACAGCGAGGATTAGAAATATTTGTCACAAACAACGGTTCTGCGAAGTGTACGTTGGCAAGAAGTTACTTGGGCGTCCATGCGAGGGAGTCTACAAGTACTTAAAGATCATCTATGCTTGCGGATTAGCATACTACGTACAAATATCAAACGAGACATCGTCAAACACCACGTTACCACCCAGTAACGcaacatcaataactccaacaaaaacaagtaacgcaacaagtaacgcaacaagtgacgcaacCCCGACGACAGCCAACCTTGCAACTGGCAAACCAATGACACCATCCGTGCCAAACGCAACATCGTTTGTCGTTATGAAGACTTCTATTCTTCAACGTACACCTGATAAAAGAACTAACGAGACGTCGTACCTGGCTGTCTTCATTGTAGCCGCCTTTTGCGCCGCCGTTCTCTTCGGCATCATATTTGGTCGTTGTTGGTACCTGCGACGAAGAACGAAGTCACAAAACTTCGCCGTTTTACACAAACCCAAGCGTTTCTTCGACTCACCCCGTGATTCCAAACAGTCAAATGGTCACGTGTCTAGACGTGCGTCACGTGACTACGTCAATGAGGAGTTACTGCCCGAGCGACCGCCCAATAAGACAGAGCTTGTAATTACACGTGCTGATGTTGAGAACACACAGCCGAATCGACCATCGAGAAATGAAGGAGATAGTAGACCCAAACCAGGGTCTGGAAACCCCGACGAAGGAGACGGTGGAAAAGGCGACAATTCAACGTTCTATGTCAACCCGATGTACGACAAAAACCGTCAGAATAGCACAGGATCGGCGATCACTTCTAGTCAGCGAGTACCTGCTACTCACCGGTTGAGCAATGCTTCAGAGGGTAAAGCGGGCTCTCTCGGATCTCCTGCTAGATCAGTAGGAAAGCAACAACAGACGCGGTGTAACAGCATGGGCAACATCCCTCGCTCTCACCACTCCTCCATGCAGCGCAGACACCCAAGCGCGGGAAATGTTGCGGCAAAGGATGGCTATGATCCGCTGACCTATCCGCCTAAGGGCTCACACCAACCACAACAACAAAGCCTTTTGTACAACGCGCCACAAATTCAACCCTACcaaggtcaaggaaactttcaaggtcaaggtcaagggaattatcaaggtcaaCCGAGGCCTATGAATCAACCACCAGGGACTCCTGGCCGACAAGGGCCTGGCCATGGGGGATACCCTGCCAAAAGCCCTATGAGCCAAAGGCCGGGTATATCAGGGCAACCAATGGGATCTCCTGCCAAAGCTCCTCAGCGTAGTCGCCCTATGGGACCCGGGGGTGTCCCTTATCCATCCCCTGGACCCCCGGCGAGGAGTGGTCATCGGCCAAATAGCCCCTATGAATATGGCACCACGGAGAATACAACTGGACCTATAGGAGATATAGACCCCAATACCGGACGGCGTTACCATAGCAGCGTCACAGGCGAGGCTCCTCAGTGGGAAGTCAATCCCCATGGCGACAGGATTGAAATTACAGTAAATCCTGCACCCAACTCCAACGGTCCCATGCAATATCGCAGTAACGGACCGCTCCACAGACGAGAGAGCTGGGAGAATATCAAACCACTCGATAACCTTCCCGTAGCAGAACCCATGGGCCACGGTGAGCATATGTCGGGGGGGTTCAATGGCGCTATTGCAGTCATTAAAAATGATCAAAAACCTGACGATGTTTTGAAagtcgagttgatactgaagggacatgttacaagaatccgaacccttgagtccagcagtgtgacctacaaaccacaaccacaacaagaCCAGAACAGAAGCACGAAACAAAATGAGATATTTAAAGAACCAAAACGTCCAGGAATTCGTACACGTCGTAGCGCGTCAGCAACATCACGTGACTTGGAAAAATTCCAAAAGTTCGTCGTAGATTTGTGCGCCATTAAAAGCACGAAGTGTGCTccaggccctcccggtccacctggaagaccagggaaaagaggtcgtagaggaccaagagggaagcgagggccgaaaggagatatgggtatcccaggtcggtttggaaagagaggcattatgggtccacctggtttaaaaggcgacaaaggagaccagggcccccacggcatgccgggactaaaaggagatccaggccaatcaatatcggctccagatattgttgtttctccctcttcattagttatcaatgaaagtgagtctgcagtcttccattgttcgtccagcggtaatccaaaaccgacgtttgtttggactaaaatgcgtggatcctcagctagtgccaggactctctcgactgataataagcttgtgatgtctagcgttacttcgaatgattcagggctgtaccagtgtaaagctacaaacattctcggTTCTGAACAACGCACTGTTCGTCTCACCGTCAACTttcatccacgaacctcattggttaaccgaccgcttttcgtcaagaaaggagacaacatcaccttaccacgatgtcatgtgactggttcccctcctcctaagatcacgtggtcaagagcttcgagctcattacctcacggtcgtacaataattcagggagaacaactcactgtcgttaatgtggagaagcaagattcagatgtttacttttgtaaagctgtgaactccctgggttcatcagtggaaagaattcaattgtttgtggtcgagATTTCTTCTTTTGTAGAAAAGCCTCCAAAATCTGTGATAACGAGGACAGGCTTGTCGATGAGAGATTATATCAACAGTCTGCCAGACAACGCCACAGTGCTTGGTGCCGTTAGTGACTCTGGTAATCGATACGGCTCGCCTGCAAACGAGGCTTTAAAGAGCATTGGTGCCCAGGCCCCTCTACAACCCAACGGTGTCCGTGAGTCCTGGTGCTTGATTGGTTATAAAGGTGGCTACAAGTCGTGGATAAGACAAGATCAGAAGGGCAGATATGACGTTCCTGCCAAAGTATCCGTCAATGTCCCTATAATTGTAAAAACTATTTACCACTATTAG

Transcript

alvinactis_v1_g5107

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF02140	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF15711	ILEI	Interleukin-like EMT inducer	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000922	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR039477	Domain	ILEI/PANDER domain	Interproscan
IPR043159	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10075	BASIGIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030246	Molecular Function	carbohydrate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-