Gene detail

Detailed information of alvinactis_v1_g4996 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g4996	WD40 REPEAT FAMILY	chr_2	34499375	34522380	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g4996

ATGGCGCCTTCCACAATTCAGAAACTAAAATCCGCCATTTCGGGCGAACCTACCGACGATTCCTTAATAACAGAGATTTCTGATGCTACAACGCTAAGTTGGTCAACAAGGATTAAAGGGTTTCTAATTTGTTTTCTTGTTGGTGTTTTTTGTTCAATACTGGGTGTAATCCTTCTGTGGAAAGACCTTCGACTGTTTGCAGTTTTCTACTCACTTGGAAATATAATAGCATTAGCAAGTACTTGTTTTTTGATGGGTCCTTGTAAGCAACTAAAGAATATGTTTAAAGAAAAGCGACTTATTGCAACAATCATAATGCTGcatcatcatccatcttcatcattcatcatgcattaccattcatcatccatattcatcatcaccatcatcatcatccattatcactatcatcccttatcatcctccatcatgacatcattcatcatccattatcatcatcatccatcatcatcattcatcatccatcatgatgatcatcTAAAACAAAGCAAACTAAACTATAATGGTAATTATCTTGATATTGATTGGGATATTGTTTCTTCTCTATCAGACTTGTCTGGTATTGACACTGTGTGCAGCACTATGGTGGTCAAACAAAGGACTTGCACTCATCTTTTGTATCTTACAGTATTTTGCATGACATGGTACTGCCTCTCTTACATTCCATTTGCAAGTTTTCCGGCCGCAGAACCCTTCGACGATGCAGTAGAAGAGAGAATTATCAATGAAGAGTACAAAATATGGAAGAAGAACACACCGTTTTTGTACGATTTGGTGATGACTCACGCCTTAGAATGGCCTAGTCTTACAGTACAATGGCTACCAGACGTCACAAAACCAGAAGGAAAAGATTATTCAGTCCATCGTCTTATCCTAGGAACCCATACGTCTGATGAGCAGAACCATGTTGTAATAGCCAGTGTACAACTTCCTAATGATGATGCTCAGTTTGATGCCAGCCACTATGATAGTGAAAAAGGGGAGTTTGGTGGTTTTGGTTCAGTAAGTGGAAAAATAGAAATAGAAATAAGAATAAATCACGAAGGAGAAGTAAACAGAGCACGGTTCATGCCTCAAAATCCTTGTATCATTGCAACAAAGACCCCTACTGCGGACGTACTTGTGTTTGATTATACAAAACATCCTTCCAAGCCAGATCCTAATGGAGAGTGCAATCCAGATCTTCGCCTCAAAGGGCACACTAAAGAAGGTTATGGTCTGTCATGGAACCCCAATGTCAATGGCCATCTACTGAGCGCTTCTGATGATCATACTATATGCTTGTGGGATATCAGTTCTGTGACGAAGGAACAGAAAACTGTGGATGCACACAGAATCTTTACTGGACATGAAGCTGTTGTAGAGGATGTTTCCTGGCATCTTCTTCATGAAAGTCTATTTGGATCAGTTGCTGATGATAAACGTCTAATGATATGGGACACACGTCAAACTAGCAGCAACAAGCCAGCCCACAACCTTGAAGCACACACTGCAGAAGTCAACTGTTTGTCATTCAATCCTTACAGTGAATTTATTCTTGCTACTGGATCTGCTGATAAGACTGTTGCACTGTGGGATCTAAGAAACCTTAATTTAAAACTACACTCGTTTGAGTCTCACAAAGATGAAATCTTCCAGGTTCAATGGTCACCTCATAACGAGACTATCCTTGCATCTAGTGGTACTGATAGGAGATTACATGTGTGGGATCTCAGTAAAATTGGTGAGGAACAGTCAACAGAGGATGCAGATGATGGACCCCCAGAACTGCTGTTCATTCACGGTGGCCACACTGCTAAAATCTCTGACTTTTCATGGAATCCTAACGAATCCTGGGTGCTTTGTAGTATCTCTGAGGACAATATCATGCAAGTCTGGCAGATGacactaactggagagtatagtagcctgactgaccagttagacctgactggagagtacggtagcctgactgaccagttagacctgactggagagtatggtagcctgactgaccagttagacctgactggagagtatagtagcctgactgaccagttagacctgactggagagtatagtagcctgactgaccagttagacctgactggagagtatggtagcctgactgaccagttagacctgactggagagtatggtagcctgactgaccagttagacctgactggagagtatggtagcctgactgaccagttagacctgactggagagtatagtagcctgactgaccagttagacctgactggagagtatggtagcctgactgatgaccagttagacctgactACAAGCAGTGTTTGCATAACACCTCAACAAGAGATTATTGATTCGTGGTCAATAATTATTTTGTCCCCTGATCTCAATTGA

Transcript

alvinactis_v1_g4996

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF04178	Got1	Got1/Sft2-like family	Family	Interproscan
PF12265	CAF1C_H4-bd	Histone-binding protein RBBP4 or subunit C of CAF1 complex	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR007305	Family	Vesicle transport protein, Got1/SFT2-like	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR022052	Domain	Histone-binding protein RBBP4, N-terminal	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050459	Family	WD repeat RBAP46/RBAP48/MSI1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22850	WD40 REPEAT FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0016575	Biological Process	obsolete histone deacetylation	Interproscan
GO:0016581	Cellular Component	NuRD complex	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0035098	Cellular Component	ESC/E(Z) complex	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-