Detailed information of alvinactis_v1_g4996 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_2:34499375...34522380
NR annotation: XP_020904049.1, histone-binding protein RBBP7 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q3MHL3Histone-binding protein RBBP4 OS=Bos taurus OX=9913 GN=RBBP4 PE=1 SV=3
Q9W7I5Histone-binding protein RBBP4 OS=Gallus gallus OX=9031 GN=RBBP4 PE=1 SV=3
Q09028Histone-binding protein RBBP4 OS=Homo sapiens OX=9606 GN=RBBP4 PE=1 SV=3
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12265CAF1C_H4-bdHistone-binding protein RBBP4 or subunit C of CAF1 complexRepeatInterproscan
PF04178Got1Got1/Sft2-like family FamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR050459FamilyWD repeat RBAP46/RBAP48/MSI1Interproscan
IPR022052DomainHistone-binding protein RBBP4, N-terminalInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR007305FamilyVesicle transport protein, Got1/SFT2-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22850WD40 REPEAT FAMILYInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0016575Biological Processobsolete histone deacetylationInterproscan
GO:0016581Cellular ComponentNuRD complexInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0035098Cellular ComponentESC/E(Z) complexInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11659RBBP7; histone-binding protein RBBP7-Chromosome and associated proteinsko03036deepkoala

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