Gene detail

Detailed information of alvinactis_v1_g4908 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_2:33291862...33302350
NR annotation: XP_031567438.1, protein MMS22-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g4908

ATGAATGATGTATTCCACATTCCCAGTTCTACACTCCATGGTTTGACTACTGTCAGTATAACCGCTGCACAGTGGATGGAGCAGTGTCTTGATAGATGTCAAGATGTACAAACAAGCTTGGACCAAGAAAACAGCTACTCGCTCTTCTTACGCATAATCGCCATTCATCTCAACAAACTCCTGCACACTGGATCACAGCAAGGATGGAAACAGATGAAAGGAAGGTTTTATTCCAAGTTTCATAAACGTCGCATGGAGGAACTAAATGAGACGGGATTGAATCATTTCCTTGGTTTGTTTCTTACTCTGTCGTACGCAGCTGAGCTAGAGGATGTGGCCGCTAAAATGTGTCAGTTTTTGGATCTTTTGGACTTCACTAGCGAACATCCTGGTAAAAAGGTTGCCATTATTAAAGGTCTGCTGGCATTAATGCTCGTCTACAAACAACGAAAAGTCGACTTTGCGTATTTAGCAACCAAGATGTCGACCATGTTTACTACGATAGCCAAGGAGTACGCACAGACTGGCACTAGAGACAAGTCACACTATCGACACTTGTGGGGCCTGATAGTTGTGTATCTTGAAGGCACACTGGACATATTTGAACATCAAAACAAACAGGATTTATCTGACAGTAAACTACTGGCAAGTGAAGGATTCAAATGGCTTTTTACCGGTTGTCATGACAACGAATTACATCACGTACTGACGTTTGTTCAATCTATGTTAGCAGTAGCGCGTCCATCGCAGGGAGATAGGATGAACAACAATGATAATATACAAGATGTGTCGGGATTCCTGTGGGAGTACATGTTCCCTCATCTACAGAAGCTGTCTAGAGATCGTACAGTAATGTCTACCAACCTGGCTGATACCATGGCTGGATTTACACTTCTAGCTTTGGAAAGgtactctgttccagtaggtgaggctgCTCGTGTGTCGTTCATGGATTTGGTACATGAATATGGTGTGGAAGATGATATCCCTGCCAGCTTTAGTTGTCGCTTCCTATGTCAAGTGATTGCAGCACGTGGTGCAGTGTCTGTCTTACAGACAGAGTCCTTACAAGGTCACGTGATACACACGTGGTTCAGGTGCTTGTTGCAACTGCCTCCATCACATGAAAACTGTGCTGAATTTACAAGGGCTGTAGCTAAGCTTCCTGTAATGGAGTTATTGACAAAGAACCAGTCTGGGTTTGGATTAAGCGACAACAGTGAAAACACACTAAAGCAGTTTATAATATCAGTAGGAACTTATAACGCTACACTGACCAAGTTTGATGAGATGATCCAGTTTCGTGAGCGAGCTCAGACGTACTTCGGCGATGTGGGCAAGTATATCGATACATTTGTGAGCAGTGGTAAGCCGCAGGACTCGCTCAGGCTTGCTTTTTCTGTGTGCGGTTCATTGTTCAAGTATGCTTACAAGAATATCTACAGTAAGACCCAGCCTCATTGCTTGTTACCAAGGTTACTGGATCAACTGATAGTCCCGCTGCATAGCAACAAGAAGACCGTGCCTCCCATCGTTCAACAGTGTCTCAAAGCCTACTTAcacttgTTTTTACAGGGTCTTTCGTGTCTGGATTTCAGACGAGATGATTTTATTAAACGAAAAATCCGACAAATATTTGGAAAATATTTCCATCCTCTTTGTCAGAAATCGCAAGCAACAGCCAATCATCCTGGAAGTGTTCCTGTCAAAAATCCTTTTCTCATGGCATTGAAAGGCTCAATGGAACGCGAACCATCGCAAGATGCAAGtGATTTTCGACAGTTCGTGGTTGAGATAGTCTCAGACTCGTTTCTACAGCTGCCTCAACCACCACAAAACCTGACCTCAACGCTTTATTTCATCGTGCAGCTGTTCAGAAGAACTCTGTCCAACAAAGAAATAGTCAGAAATACGACGTGTATGTTGATACCAGCCTTGGGGTGTCTGTTGGCTTGTAATGCCAGTCCACCAGCCAATGAACCACCGAACATAAGACGACAAGCTACAGACCTTTTACGAATGATGATAGAAAGCTGTAAAGAAGACCAGAACCATAGGGACATTTTGTTGCCACTACTAAGAAGCTTTGTGTTTAACAACCTACAACAGTTTCAGGGATTAGTTTTTAAAACATTCGATCCCCTAGCAGTCCTCGACCCAGACCTCGTGGCCGAGATCATCCCTGTTCTCAAACAGTCCATCGTGCAAAGCGAGCAGAAGCGTGGTGTTGGCTCAGACTCGCAGCTTAGGGGAGCATTGCGGGAGCTGCTACAGCATATTGGACGGGATGACGAAGCTAATAATACCGAATACTAA

Transcript

alvinactis_v1_g4908

Protein

Uniprot

Uniprot term	Description
E1C2Z0	Protein MMS22-like OS=Gallus gallus OX=9031 GN=MMS22L PE=3 SV=1
B3DIY3	Protein MMS22-like OS=Danio rerio OX=7955 GN=mms22l PE=2 SV=1
E1BGH8	Protein MMS22-like OS=Bos taurus OX=9913 GN=MMS22L PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14911	MMS22L_C	S-phase genomic integrity recombination mediator, C-terminal	Family	Interproscan
PF14910	MMS22L_N	S-phase genomic integrity recombination mediator, N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029424	Domain	MMS22-like, C-terminal	Interproscan
IPR029425	Domain	Protein MMS22-like, N-terminal	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR042320	Family	Protein MMS22-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28547	PROTEIN MMS22-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0043596	Cellular Component	nuclear replication fork	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26125	MMS22L; protein MMS22-like	-	DNA repair and recombination proteins	ko03400	deepkoala