Gene detail

Detailed information of alvinactis_v1_g4747 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g4747	LETHAL 2 GIANT LARVAE PROTEIN	chr_2	30430213	30472252	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g4747

GCGTGCAGATATGGTTTTCCTTATCAACCTACCTCGGTGGCAGTGGACTCTGTGCAAAGTATCGTAGCCATTGGGACATATACAGGTTGCCTTCGCATATTCGGCAAGCCTGGAATTGAAGCTCATGTGCAGCATGATTCTGCTTCACCTGTCAGGAATTTACAGTTCATGAGCAATGAGGGGGCATTAATTAGTTGTTGTCCTGAAGACTCAATACATCTCTGGAATCTACGGCAAGCACAGCCAGTGATAGTGCAGTCACTGCGATTTAATAGAGAAAGAATAACATGTCTACACCTTCCCTTCACTTGCAAATGGTTGTTTGTCGGCACAGAGAAAGGCAACGTACATATTGTAAATATAGAAAAATTTGAAGTATCAGGATACACCATTAACTGGAACAAGTCAATAGAAGTGCATTGTAAAACCCACCCTGGTCCTGTAGTACAGATATGTGATAACCCATTAGATACTAATAAGATTATACTTGGCTTTGAGTCTGGTACTGTTGTAATTTGGTCATTAAAAAACAAAACTGCAGAGCAGCGCTTTAATTGCCCTCAGAAATCTCTCACTTCCCTTTATTGGTGCAACGATGGCAAACAATTCATGTGTTCACATACTGATGGCACTTTAAGCATATGGAACAATAAATGTACTGACAGACCTGCCGACACACTGTCTCCACATGCAAAATCAGGCAGGGACAGACCATTTGCACCCATTTCTAAAGTACAGTGGTTAGCCACCTCATCTGGCGAGCCAATCATTATCTTCTCTGGTGGTACGCAAAGAGGGAAACGGAAAGGTTTGACACTGTGTCAAGGAAAGACCACAAAACTCCTGACAACTGAATCCATTCTAGACTTTACTACAATATTATCAACTCCTTGGACTGAAGATGTCCAGGACCCCAAGGCTGTGATAGCTGTAACTCCTCTACATATGCTGGTGTTTGATTTAAAGACTTCAGCATCAAAGCCCCTCTCGTATGATGTTCCATATGCCTTTGATATCCACGAGTCTCATGTCACTTGTACCCAGTACTTCTCTGATTGTCCACCTGAATGTATTGCTGATATTGGTAACGTTGGCAACAGGCCTAAGAAAAACCATCTAGCTAGAAAGGCTAGTAGGCAGGCATGGCCTATAATGGGAGGAGTAAGTGGAGAACAACCAGAGAAAGCACCATCAGAACTCATCATAACTGGTCATGCCGATGGCACTATAAAATTCTGGGATGCATCAACAGCTGCTTTGTTCCTGTTATACAAAATGTCGACGTCAAAAAATTTTGAACGAGAGAAATCCAAATCGTCCGAAGAGGGTAGTGACAATACTGAACCCAAACCCACCACCTCTGAAAATTCAGAAAGTAGCAACCATCGTATATCACAGGATGATGAACCAGAAGCGTACTCTGTCCAAATGTTGGATTTTTGTGTCCACAGTAGGATTCTTCTTGTAGCGGGTGCCACGTATGTGTTGTTGTACCAGTTTAGCATGACTGAACAGTGTGTTGAATTAGTGCAAATAGAGTTGCATCTGTCCTTTGAACCAACACCAGGCACTCCTGTGTCATCAGAACAAGATAATACTTTTGCCCAACCAGGCGACCGAAGTTCAAATTCCAGTGGAGACTTTATGCCTGAACCTGTACCATTACCAATAGTTTTCTGCAAAACAGGCACTTACAAGCGGCATGCAGGCTTCCAGGCAGAGCTAGCATGTGTCATGGCTGGCAGTCTTGAAGGTTGGCCAATTAGTGAAATTTCACAGAGCTCACAACTTGGAATTGTGTCTATATGTAGTGGTCCGACATTTGCCTTGGTTGATGTTATCCAAAAAAAACTCATAACTGTATTATCAGCGCAAGAAATGTCTATTCTTGCAGAAAGTCCAGGCAATGCACACCCTCAAACCCCCCATTCAGTAACACCCCTCACACCAGCCACACCCATAACCCCTGGCACACCCCTGTCCTTTACTCTCAGCATGGACCCATCAGGAGGTCTAGACTTCTCTGAAACAACTATTCAAAAACTTGAGAAGAGAAGATCAAAACCTGCCAGACCCCCACCCCCCATACGAACCAAGTCCAAGGTTGACGAGGCGTCTAATGGCAATGATGTCACAGAGGGTGCAATGCACACTAAGGTGCATAGGACTGTAAGTTATCCCTCAACGGCAAGCGTTGGTCCTCCAGATACAGTTCAGTGTACCAAGTTTGCTTGTTCTTATACCAAAAAGAATGATAATTGGATAAGTCCATGTTTGTTAGTCGGCACAACTAAGGGTAATGTATTCATGGTGGTGATCAACATGCCCCCAGCAGAAGAAAGACTAGTACAGCCGATATTGACCATCATTACAGGCACTGTATTTCGACCAAAGTCAGGTATGATAATGGCCATGGCATTGCTGAATAACCAGGGACACTTGTTTCCTTCACCTTTAAGATTCTGGACAGACAAAAAAGTTGAAAACCAGTTAAAAAAAACTGTGACAGCAAGGGAGAGTTCAGAACGGCATTTCCTAGCTGTCTGTACAGAAAGAGAAGCTAAGGTCTATCAGTTGCCAACAGCACATACCAATCCTACTAGTTATTCTAAGACAAGTGTCGCTGATGATACATCTGTAGTGCTATCTTCTCAAGTTGTTGTTATTGAAGGCAGCAGTTGTTTGATGTGTCTTACCAGTGTTGGTCAACTAATGGCTTTTAGCCTTCCAAGTCTATCCATGCTTATCAATGCAGAGTGTAGTTTTTTATTGACAGATTTTAGGTACCTCAGGACACTAAAGTTCTCTGATGGTGGTCTGGCTATTACCATGTGTTCACCACATGAGATACAAAAATTGTGTATGTTTACAAGAAATGATTCTTATCAGATGTCTGGTCAGATGTCATTATTTTGTCCTATGGACATGCCAGAACGACCATCCAAAGGGTTCTTTACGAGTTTATTCAGCTCTCAAGCATCACCTATAGACCGTGAACAACTATttggtgtAGAGTGTGGTGCAGCATCTAGAAGTATTGCAGAGAGAAGACAAGGACCAGGCATAGAACAACTACAAGAAGTGTCTGTAGGTCTTGCAGGAGCAATGCAGAAAAATAGAGAAGCATTAATGGAACGTGGCGAGAAACTCCACCACTTAGAGAAGACAACAGCCGATATGTCATTGAATGCACAGCATTTTGCTGACGTTTCAAACCAGATAAGACTCAAATATAAAGAGAAAAGGTGGTACCAGGTGTAG

Transcript

alvinactis_v1_g4747

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00957	Synaptobrevin	Synaptobrevin	Family	Interproscan
PF08366	LLGL	LLGL2	Family	Interproscan
PF08596	Lgl_C	Lethal giant larvae(Lgl) like, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000664	Family	Lethal(2) giant larvae protein	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR013577	Domain	Lethal giant larvae homologue 2	Interproscan
IPR013905	Domain	Lethal giant larvae (Lgl)-like, C-terminal domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR042855	Domain	v-SNARE, coiled-coil homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10241	LETHAL 2 GIANT LARVAE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0017157	Biological Process	regulation of exocytosis	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0031201	Cellular Component	SNARE complex	Interproscan
GO:0045159	Molecular Function	myosin II binding	Interproscan
GO:0050708	Biological Process	regulation of protein secretion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-