Gene detail

Detailed information of alvinactis_v1_g4711 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g4711	WD REPEAT DOMAIN-CONTAINING FAMILY	chr_2	29654183	29666523	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g4711

ATGAACCCAACAGACGGTCTACATGAAGCGTTACAACAGCGTGTATACGGCTCGGTCGCTCCTGATGTTCTGTTTCGCCGGGCGAGAGGAAACAAATACTTTCTACAGTGTCTTGAGAGGAGTGGGACATTAACAGGACACGATGGATGTGTGAATTCAATATCTTGGAGTGATTCTGGTGACCTGTTGCTCTCTGGCTCTGATGACTGCAGGCTCAACATCTACCGGCCATTCCAGAAGAAGCTGCTTCACTCCATAAGAACTGGTCACCGTGCCAACATATTCAGTGCAAAATTTCTGCCATGTTCTTCAGACGAGAAGGTTGTATCTTGTTCAGGTGATGGTGTGTTACACTTTACTGACATTGAAAGACCAGAGAGTTATGGGAAGTGTTCGTACAATTGCCATTCAGGAACAGCCTATGAGGTCATAACAACCCCTGGTGATCCCAATACTTTTATATCGTGTGGTGAAGATGGTACTGTACGCATGTTTGACCTCAGGACAAAGTCCCAATGTTCCAAGCGAGACTGTAAAGAGGACATACTAATCGAATGCGGCAAAGCTGTAACATCGATCAGCATCAACCCCTTGGCGCCATATCAGCTAGGGATAGGCTGTGAAGACAGCACAGTGGCATTGTTTGACAGACGTTCTTTAAGCACAGCCAATTCCAGCACCGGTTCCAATGGAATGACAGGAATGGTCTATAAATTCAAACCAGAGTCCTTGAAGGACCGAacatgtcgcgtgacgtccttggagtatagCTCAAATGGAAGCGAGCTTCTTGTAAGCTACTGCGCGGACTATGTGTACTTGTTTGACACGAGGGGACAGAAAGAGGTCCGTCTTACTTGTGATGGTGCCCATGGAAACGGATTGTTCCCTAGCGGTTCTAAAAAGAACGTGCCATTGAAACGACTGAGGCTGAGGGGAGACTGGTCCGACACCGGCCCGAATGCAAGACCCGAAAGCGAGGGTGTATCAACAGAGAGCACGTTAATGCAGCGCATGTCTGATTTGTTTGTCCGCTGGATTGAAGAATCGTTCCGCGGGAGCCAACGAAGTAGGCTAAGATCGTCTCAATCTCGGGCTTcgtcgtcctcgacgtcgacatcgatgtcttcctcgacgtcATTTCCGTTGCGTTCCACAAATTCCTCTTCTTCGGACAGTTCAGGAGTTATCGAAGCCGCTGCTTCCGGCCCGTCGCGCGATGCCGTTGCTGCTATTGACGAGTCTCCAGATGAAATGGACGAATCGACGAGCACTTCGCCATCGGTTATCACAGTGAAGGACGCGGAGAGTATGGTAGAAGATTTACCAAGTCAAACGAGGAGGGAATCCCCCGAGAAGTCCCACGGGGAATCCCCCATGGATGCCATTCAAGATGAATCTGCTGACTTGTTGTCTGCAGGCTCAGCTATGCCTGGGTCAAGCGGGCTTAATGACGAAAGGAACGAAAAAGAATCGGTCAGCTATGACACTACACACGATACAGACTGTGATGAAATGGAACTGCAGGTCGAGGGAGGGGCATGTTCACCAAGGGAGGATTCAAATAATCAAACAACAAAAACTAAACTAAAACAGCAGGGCGTGGCAGGAACACGTGGTAAGTCAGTTGAGGACAGACATAGCACACCCGAGACAAATGGACGATGTAAGACTGAAGCACGTGAGAAGGGCGTGGCAAGTACACGTGGTGAGGTGTCGCCAGGCTCTGATACCTATGCCTCCAGTCAAGAGACTATGTCGGACAGCCCACAGAGCTTGGCAGCCACTCGAATACAGCGTATGTATAGAAACTACAAAGCAGCGAAATATACAAAGCCAATGGAAGATTGGGATTACCTCAGGGACGGCGAAGAAGAGATATGGGTTCCGAAAATGACCAGAGTGTATCGGGGGCACAGGAATGCACGAACTATGATAAAGGAGGCCAAGTTCTGGGGCGATCGGTACATAATCAGTGGGAGCGACTGTGGTCGGATCTTTCTCTGGGACAAAGACACTACAGAAATCGTCATGGTCTTACAGGGAGACCGCCACGTGGTAAACTGTGTTCAGCCAcacccttttgatcctaTACTTGCTTCAAGTGGAATTGACTACGATATTAAGCTATGGGCGCCTACAGCAAACGAACCAGTTCAAGTAGAAGGCTTAGAAGAGATTGTTAAGAGGAACGAGCAAATGCTAGAAGAGAGTAGAGACACCATCACGGTTCCTGCGTCATTTATGTTGAGGATGCTTGCTTCTCTTAATCACGCTCGATTTGGTAGAAATCAGGATGAGTCAGACACAGACTCAATTGAATCTGAATGA

Transcript

alvinactis_v1_g4711

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045151	Family	DDB1- and CUL4-associated factor 8-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15574	WD REPEAT DOMAIN-CONTAINING FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0030374	Molecular Function	nuclear receptor coactivator activity	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0080008	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-