Gene detail

Detailed information of alvinactis_v1_g4709 in Alvinactis idsseensis sp. Nov.

Genomic Location: chr_2:29582480...29624365
NR annotation: XP_028515424.1, intersectin-1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

alvinactis_v1_g4709

ATGGCTGGGCTGGGGTCTGCACAAGGTCCTTGGGTTATTTCTCCGGACGAGAGAACCAAACACGAAGCGACGTTTCAGAGCTTGATTCCCCTCAGTGGGTTTCTGTCTGGAGCACAAGCCAAACAGTTCTTCTTGAAGTCAAAACTACCACCAATGGTTCTTGGGGAGATTtgGAGTCTGTCTGATCTTGATCGTGATGGCAAAATGACCATGCAGGAATTCACAGTTGCGATGCATCTGATTCAAAACAAACTCAAGGGAATTGACCTTCCATCTGCTCTCCCAAACACACTAAAAATGACTTCTATGCCGAGCACTCACCCATCACCAAAGGCTGGTAACTACAGCCCTAGAGGTGTCTCTAATGGCTTTACTAACATATCAGGATCTACAACATTACCTCAATCAACTGGTATTTCATGGTCAGGCGTTAATCAACCTGCATCTACTGTTGCATCGTATGGAGTATTGCCTACAAGTATGAGTCCATTAGGATCACTGTCGTCTTCGTTTAACATGGGCAGCGGCCATAATACTAATACTACCAGTATGGGTTTTTATAATGGTCCAGGGATTATGGCTAGTAGCGTCCAGTCGAATATACCACTGGGCCAAGGCAATAAAGGAACTATGACATTTTCTACTAATACTCCTTCTGGGATGAATACTATTACACCTGCTGCTAAACTTAAATATAATCAGATGTTTAAAGCTTTAGATTTCATGAAAACTGGATATTTGTCAGGTGAACAAGCCAGAGGAGTATTGATACAATCAGGTCTTTCACAGCAATTTTTAGCAAAAATATGGAGTTTATCTGACTTAGATAGGGACAGTCAGCTAAATATAGATGAATTCTCATTAGCGATGCACTTCATTGAAATGGCTAAGCAAGGTCAGCCATTACCGCTGACCACGCCGCCTGAACTTCTTACGCCTGGACAGGCTAGAACACACTCGGACAGTGTCGGTAGTGCATCTGATGGTAGAGAGAGGTCAAGCAGTACAACTAGTCTTGATGGACGATCAAGGTCTGGCAGTCTGGCAGATGACAAAAGAAatatatgtacatTTACATTTGAAGACAAACGAAAAGAAAACTTTGAAAAAGGAAGGTTAGAACTGGAACGAAGAAGGCAGGACTTGCAGGAGAAATTAAAAAGGGAAAGAGATGAACGGGAAGGAAAAGAACGACAGGAAGAAGAAAGACGTATCAGAGCAAAAATTGAAGCAGAGCAGAAAAGGCAGGCAGAGCTGGAAAAACAGCGACATCAACAGCTCGAGATGGAAAAGGAACAAGAGACTCTAAGGAAAAAGATGATTCAGCAGAGACTAGCGGCTCAGATTGAAGCCGAGAAACAGCGGCAACTTGAATGGCAAAAAAGAAAAGAAGAGGAATTATTGAATCAAAAAGGCTTAGAACAGGATATCGTGAACAATTTAAAGTCCAGAAAGAAGAATTTAGATGATGAGTTAGCGTCTGTGGTTGGTAAGAAAACAGCATCACAGCAAAGCTTTGACAAAGAACAACAGTCGTGTTTAGAAGCACAGACAACCTACAACAGTGTATATCAAAACAGGGAAATGAGAGTGACCGACATCAGTAGGATACAGTGTGAAATTAAGGAGTACCAACAAAGACTAACAGCTCTTAGTAATGAAAGAGAACGAGTCTCTCTGGAATTGAATCGAAAGGATACCAGTAAACTAGCTGAAGCTCATGGTAATGCATTGGTTAGCCTGCAAGATAACAAAGCTGGCATTAAAAGAAAAGAAAACACACAAAACAACCTGGAGAAAGATTTGAATGACAGGCTTAAAGAACTGGATTCTTTGAACTCACAGCTAAAGGATACACAAAATAACACACAGCAACTTACAGAAGAAAACACTCGACTACAGCAAATGACAGAATCTAAGCAAAGAGAGTACACCATATACAAACAGAAAAAAGATGAGGAAGAGAGAATCAAGAAAGAACATGATGCTAAATTACGACGAGAGGAGGAAGAAAATAAAAGACAGAAAGAGAGAGAACAAGAAGCTATGCGATTAGAACAAGAGAAACAGAAAAAAGACCAGGAACTCAGACGGCGAATGCAGGAGGCACGAGAAGCTGAAGCCAGACGTAAAGACCAACAGTTGTTGACTAAAGACAAAATAGTAGTACAACAACAACAGACACTAGTAAACACTGTAATCAAGAAACAAGAGACTAGTGTTGTCAGTCATGAATGGAATACCTCACAGAAAGTAACCACAGAAAGAACAGAGAGAAAACAAGAAATAGCCATCCCCAGACCAAGGCCAAGACCAATACCAGCCAAAAAATCGAATTTAGAATACTACAAAGTGCTGTTTACATTTGATCCAAGAAATCCTGATGAAATTCTGATTGAAGAAGGACAAGTAATTGCTGTTGATCATGACAGTATGAACGCTCCTCCTGGCTGGCTAAGAGGGATACGTGGAGACAAATCAGGCTTATTCCCTGAAAACTATGTTGACAAGATCACCGAGGAAGAAGCTAAAGCAGGCAATACTGTAAGAAGTCCCAGCCCTGAAGAGAAGATCCCTGAAGTATCAGTCAAATCATTAGTAGCGTCAATAAGTAAGCAGCTTGGTGTCGGCGAACAGGTGGAgacgcagtcggtgacgcagtcggtgacCAGCACTAGAACATCACAGAGTACTACACCAAGTTCTGATGTACATGTACAGGGTCCAAGATCTGAAGGAGGTACTCCAGCACCCCAGGGTCTTACCGCAATAGCATTATACCCTTACAGAGAGAGAAAGAAAGGTGATATGGCACACCTAAGCTTTAACAAGGGTGATATAATAACCATAAAGGAACAACAGGACATGTGGTGGTATGGTGAACTCAATGGTAAAGTGGGATGGTTCCCTAAGTCTTACGTCAAGCTATCTGCAGCTAAGACTACAGGATTAGTGCAAAATACAGCAAACAATGACATCTATGATATACCTCCTGTTATTGAACCAGTAACTGAAAATAAACCAGAAGAACTGGCTGTACTTTTTGAATGTGTTGCATTGTACCCATACACTGGTGAGGCAACTGACCTCAGTTTTATCCAAGATGACGTCATAAGTATAACCAAGGCCGAGGGGGATTGGTGGGAGGGCAAGCTACGAGGTCAGACTGGACTATTCCCCGCCAATTATGTCAAAAAAGTTGAAAATGAGGGACCTACCGCCACTACAAGATCAAAGCCTGAGATTGCTACAGTAATAACCCCTTACACTGCGACGACATCTGATCAGCTTAGCTTAGCTCCAGGGCAGCTTATACGTATCATTAAGAAAGATCCCAGTGGATGGTGGGATGGTGAACTACAGGCACGAGGAAAGAAACGACAAAGTGGAATCTTTCCTTCAAACCACGTGAAACTACTTAGCAAAGGTCCTTCTCCTTCTGTAACACCTACGTCATCAGGGCGAACCACGCCCCAACCTGGAGATGTCTCGAGTATATATGAAGTTCCAAGTTCTTCAAGGAGTTTAGGACACGCCAAGTTAGAGCAAGTACTAGCAATGTTCCCATACACCGCACAGAATCAGGACGAACTCACGTTCTACAAAGGAAGTGTACTCAACGTGATAAGCCGTGAAGGGGACTGGTGGAAGGGAGAAATGAATGGTCTAGTGGGGATGTTTCCATCCAATTACGTCCATGCACTGAGTGACCTACCAGAGAcaacgacagaatGGATCGGGTCGTTTGACGCGCAGGTCTTGGCATCGATGTCGGACATTGAGCGTAAAAGACAGAACGCACTCTACGAGTTGATAAATACAGAGCAGTCATACGTTGATGCCCTCAGTCTAGCGTTAGAGGTATTCTTTAACCCATTATCTGAATCACAACTTCTAACCCAAGAAGAGTTATCAGTCATCTTTGTGAACTGGAAGGAGCTGATTCGCTGCAACATGAAACTACTCAAGGCGTTTCTTGTTCGAAAGAAAATGAGGAACAACGGTCTCATCATGATGATTGGGGATCTCATGTGCGAGCAGCTTCCTCATTTCTCGCCGTACGTAAGGTTCTGCAGTCGACAACTTAAAGCCTGTCAATTCATTCAACATATGATTGAGACTAGTGCTGAGTTCAAGCAACTTGAAAAGAAATGTAGTTTAGAGCCACGAGCCAACGGTCTACCGCTCAGCAGTCACCTACTAAAGCCGCTACAAAGAATCTGCAAGTATCCTTTATTGATAAGAGAGATGTTGAAATACACGCCTGAAAACCACCCCGATCGATCCAACCTGGAGTTTGCTTTAGAGAAGGCGGACGAACTGTGCAGCCAGGTCAACGAAGGGGTTCGCTCACAAGAAAGCACAGACCTATTAGAATGGCTGCAGACTCACGTTCAGTTGGAGGAGCTATCAGAGGAGCTTATCTTCAACTCTACGACGAACTGCCTTGGCCCTCGTAAGCTGGTTTACTCAGGAACGGTTTATAAGGTCAAAAGTGGTAAAGAGTTAAAGGCGTTTCTATTCAATGACTTTCTACTGCTGACCAAAATCGCTGGAAGTCTGTCCAAGAAAATCGGCTTTGATTCAAACGATGCGAACACTCAATATACACTGTACAGAAAACCGATTATCTTGAACGAGATTGTCGTTAAGCGTACATCAGACGTGAACTCTGAAGAGAATACTTTTCACATTTCCCACATTGATCGAGTATACGCCTTCAGAACAGACACCAAACTTGAAAGAAATAAATGGATCGAAAATTTAGAGAAGTCCGCTGACCACTACGTAGAAACAGAAAGGTTTATGAGACAGAAAGCCCATCGAGCTCGCTCTATCCGTAGCCACGGCATTGGTAAACTAGTCGTGACTGTTTTAGAAGGAAAGGATCTCCGTGCTGCGGATCCTTGCGGTACGAGCGACCCCTATTGTCAAGTAAGCATGGGTAGCCAGGAACACAAGACCAAAGTCTGTCCACAGACAAACAATCCTAAGTGGAACTCGACCATGTCGTTCTTTATCAAAGACATGGAGCAAGATGTGTTATGTATCACCGTGTATGACAAAGATTTCTTCTCGCCTGATGATTTCCTTGGTCGTACAGAAATAAGTATCCACTGTCTACGAAGGCAGAGTAACTCCAAGGGACCGTGGCTACAAAGACTGCTACTGCATGAAGTCGCTACAGGAGAAGTGTTATTGAAGTTGGAGATACAATAA

Transcript

alvinactis_v1_g4709

Protein

Uniprot

Uniprot term	Description
Q15811	Intersectin-1 OS=Homo sapiens OX=9606 GN=ITSN1 PE=1 SV=3
Q9WVE9	Intersectin-1 OS=Rattus norvegicus OX=10116 GN=Itsn1 PE=1 SV=2
Q9Z0R4	Intersectin-1 OS=Mus musculus OX=10090 GN=Itsn1 PE=1 SV=2

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621	RhoGEF	RhoGEF domain	Domain	Interproscan
PF07653	SH3_2	Variant SH3 domain	Domain	Interproscan
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF16652	PH_13	Pleckstrin homology domain	Domain	Interproscan
PF12763	EF-hand_4	Cytoskeletal-regulatory complex EF hand	Family	Interproscan
PF00168	C2	C2 domain	Domain	Interproscan
PF14604	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000261	Domain	EH domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR000219	Domain	Dbl homology (DH) domain	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR051480	Family	Endocytic & GEF Adapter	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR000008	Domain	C2 domain	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR035899	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46006	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0035025	Biological Process	positive regulation of Rho protein signal transduction	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20045	ITSN; intersectin	-	Membrane trafficking	ko04131	deepkoala