Gene detail

Detailed information of alvinactis_v1_g4377 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g4377	ENDONUCLEASE-RELATED	chr_2	24393583	24397619	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g4377

atgtcaagtcaaatggtggtacgatgttttgcttttctatcttttatactggtgtttttgtgtcatgtttcggaagcgggttcagatgacaagaaagtgaagAGAAGAAATTTAGCGATTGATGATGAGGAATACGAGGCTTTATGCAACATTTTGAAAGGGAAAACGAGCTTTCAGGAATGGCCTAAACAATCAAAGCCAAAGTTAAGACAGAGAGTTTACAAAAAATGGAGGAGTGGTCTGTATGATATACGTGAAATGCATGATCCACTGGTAGGTAAGCCGGTCGAACGCCTCGTTTTGAAAGAAACTAACACCATCATCATCAAAACATCTGATGTGGGTtctcttgtcagcggtatctttcaagaaaccaaaggtgaaggggcacgtaaaatccaagggaacgcgcaatatatatattcaggtctatcacgtaaagctatacaaaaacagttgaactctatgaaggaaaatcaacttgttcgacctcttttccaaaacaaagcgccacttcgcccaataaagtcatctagagtgcaagagcgacatcaaattgatcttgttaacatgatgagcgtacctgtaacatcaagttcaggtgaaacatacaagtacattatgtcagtcatagatatatttagtaggtttgttttcttgcgaccgctgaagagcaaagagtcggtggaggtcgcagaacaactaattgaaatctatcaagagcacggccccccagaaattcttcagagtgatcaagggacggagtttaaaggaattgttaaaaaggtctgcgaggaacttaacgttcgcataataaagagctcagcctacagcccgcaaactcagggaaaagatgaacgttctcatcgaacctggaaggagaaaataaaatttgacgtgctcaacagcgacgacggtgattttaactggcttgagtatttacctctctatcaattgctctacaacgagtcacctcatagttctttgggaggtgcaacaccttttgaaatatattttggtaggtcccctaacaggttgaaaaatcgtctatcgttcgaaaacaacaaacaagactatgaagtatcagaggaaaatgtgaatgttgacgatacaagtgcttgtacaccgacagaagaacaagttaacaaattcatcaatgcacagaaatatataagggagaaggcgttgagcgcgTCGAATGTTGCTGCGCAGAACATGATTAAGAGGGAATTAAGACGAAATCCTCCGTCTCTATATAATAAGGAGGAAACTGTTCTTGTTCGAGTTGCAAGATCTAATAAGACAATCAAAGGAAAGCGAACGACTTTCAAGAGCTGTAGCGAGGGAATCGTTCTAAAATCAGACCACAAAGAACACAAGTACTTTGTTAAATATAATGACCCTCAGTCTGGGAAGGAAAAGAAAGAATGGTTTAAAGTTGACAATATCACATCGTTGACAAAGGAAAAAGAATCTAAGAGGCAGAAGATCGCTCAAGGTAATATGAAGAAAAGGAAAATAACAGATATCTCAGATGACGAAAAAGTTAACATATCGATGAAAACGGAATGCTTGCTTGATTCATGCATCGATGAAGTGTTACGTAACGACGAATTGTCAGGGGATACAGTCAATTTTTACTTCGACTATTTGAAGCGAAAGTGGAAACCTCAGTTGAAAGGAATAAGTTTGGCAAGTACATACTTTTATAACTCTCTCGATCGAACGGAACCATCATATCCACAATATATTGACAAGAACCCTCTCAAAGATCATGAAAAATTAGTTATTCCTGTTCATCTTGCCTCCCACAACCACTGGCTTCTTGTTGTTCTCAGCATTGTCCAACTATGTATTTACATATATGATTCTGCAACAGTTCCCGAAAAAGAATATCAGGACATTTTTAAAAAATTGAAAAATTGTTTTATAAAACGAGAAGTTGAGAGCTTATGCACCATTAATACTGCAACAATACTTCATGAGGATAACTGGGACGAAAATCTACCCGTATTCTCAAAACAGACCAATAATACTGACTGCGGTGTGTTTACATGTCTGTTTGCCAAACATTTAGTGACTTCAAGTAGCAGCGATCCTCGTATTGATCTGTGTGAAGAAAATCTTAGAAATGAGATGATAAACGATTTACTTGAGCTTACCACTCTCACATGCCGCACCCATGATCGACCAGGTAACCTTAGCTGGCTTATTGAGGACGGGATCTTTGAAAATCAGAAAGTAAAACTTGACAGGCAGGTTTGCAGGGATGGTGTCACCAACTCACCAACTGCAACTGAACTACGTTCAGATGTTGTTTCTTATCTTCGTTCCAATCCGATCACCCCCGATGGAATCCACTTCAGGGAATTTCTGCACCACCGTTCATGGGAGAGCTATTTAAGACGGATGGCCAAAGACGGGGAATGGGGCGACTGGATCATGTTATGGGGCCTTGTTAACATGCTAAATGTCGATGTCGCCATTGTATCAAGTCTTGGCGACAAGGGTTTGCGAGTTGTCAGCCCTTCGTGTCATCGAGTTGAAAAAGATGTTGTAAACGTTGTCCTCCTCGGCCACGAGGCTGAAACACACTACCACAGCCTAAAGCCAACAAACTTAGTCGTGGAACCATCGCCAAAAGTCGACGTCGTTCAGGAACTCGAGAGTATGTATGGTAAAGGGGAAGCCACAGAGGAAATTTGTCCCCGGTGTGGAAAGAAGTTTGAAAGTTTGTCAGCGGGAGTGTACTGTAGTGCCGGTGGAAGCATCATGAGCTACGCAGAAGATACAGAATTCTGCGACGATTGCAGTAGAGAACAGACCAGTTATGACTGGGAAACCGTTGATCAGGTTTGA

Transcript

alvinactis_v1_g4377

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|ULP\|ULP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF02902	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR003653	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-