Gene detail

Detailed information of alvinactis_v1_g4080 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g4080	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	chr_2	19144439	19201027	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g4080

atgctccattcagtaataaagcacttagaaagtgGTGCTGATCACATTCTACAAACCAACAACAGAGAACACAACAAGCAGTTCAGATTTGCTGATAACTTCATCAAGACATCAAAGTATTCTCTGCTGACATTTTTACCAATCAACTTGTTTGAACAGTTTCAACGAGTTGCTAACATGTACTTCCTTCTGCAAATCATCATCATGTCTATTCCTGAGATTACAGCTTTGAAGCCTGAATCAACTGCTGTGCCATTGCTTTGTGTCTTGGCTGCTACTGCTGTAAAAGACGCTTATGATGACATTAAAAGACATCATAGTGACCGTGGAGTAAACAATAGAAAGTGTAATGTAATACTGGATAACAGCATTGAAACTTCTAAGTGGATGAAGATTCAAGTAGGAGACATTTTAAGACTGAATAATAATGACCAAATACCAGCAGATATCGTAGTTCTTACTACTAGTGAAGAAAATGGTTTGTGTTACATTGAAACAGCTGAATTAGATGGGGAAACAAACTTGAAATGTCGGCAGCCTCTCCCAGAGACTGGAGAAATGGGAGATGATGAAGATCTTCTTTCAAAATTTAGTGTTGAATTAAGTTGTGACGCCCCTAACAACAAACTTGACAAATTCAATGGAAAAATAAAATTGGATGAGAAGGAACACTCATTGGATAACGAGAATGTTATTCTTAGGggttgtgttctcaggaatactgcttgggtgtatggtgttgtagtaTATGCTGGACAAGACTCCAAGCTTATGATGAACAGTGGAGTGAGTAAATTCAAGAGAACCAATCTGGACAAACTTCTCAACAAACTCATCATATGGATTGCAGTGTTGTTGGCATGTATTTGTGTTGTATTGTCTATTTGTACTACACTATGGGAGCACTTCACTGGACAGTATTTTCAAGTATATCTTCCTTGGCCATCATTCTACAAAAACAATACAGTGATTATTGGTATTGCACATTGGCCATCTTTCATCATGGTACTGAATACACTCATCCCTATATCACTGTACATCAGTGTAGAGGTGATAAGGGTTGGACAGAGTATATGGATTAATTGGGATGTACTTATGTACTATGACAAGAAAGATACTCCAGCAAGAGCAAGAACTACAACACTCACAGAGGAACTGGGCCAGATTGAATATATCTTTTCTGACAAGACTGGCACTTTAACACAAAATGTGATGACTTTTAAAATGTGTTCCATCCAAGGCAAGATGTATGGAAGGCCCAGATCCAAAGGGGACTTGTGTGGCTCTGCATGCACTACTGTTGCTTCTGCACACTGCAGCTACATGCATCACTCATGCCCATATCATAAGTGCTTCTTCAAATGCCCTTTGCATGGTAAAGACACTGATTCACCAGATGATTGTGTTTCAAACATAgatagaagtgagTCTTCACTGGTGGATTTCTCTAGAAATCAATACTACGATGGCAAATTTAAGTTTTATGACCAAGCATTAATTGATGATGTATACAATAATAGCAAGGACTGTCATGAAATGATGAAGTTGCTAGCTGTTTGTCACACTGTCATGATAGATAATCTAGAAGAGGGTTTAGAGTACCAGGCTCAATCCCCTGATGAAGCTGCTCTAGTTACTGCTGCCAGGAACTTTGGATTTGTTTTCAAGGAACGCTCACCTACAACCATTACAATCGATTTTCTTGGTCAAGAGGAGCATTATGAGCTGCTTGCTATTCTAGACTTCAATAATGATAGAAAACGCATGTCGGTAATAGTGAAAAACAACAATCAAATAAAACTGTATTGCAAAGGAGCAGACTCAATTGTATTTGAAAGACTGGATCCATCATGCAAAGCGATGATGGCGATTACGcatgagcatctcaacGTATTTGCTTGTGAAGGTCTAAGAACTCTCGTAACTGCCTACAAGGATATCCCACTTGATGTTTATAAGGACTGGAGTCATAGACACCACCAAGCAAGCATTGCTATGGAGGATAGAGATGAAAAAGTACAAGCGGTATACGAAGAAATAGAAACGAACCTTATTCTTATTGGGGCGACAGCCATCGAAGACAAACTACAGGATGGTGTACCCAATACCATAGCCACTTTAGCGGCAGCTGATATTAAGATATGGGTGTTGACTGGTGATAAACTTGAAACAGCAGTGAATATTGGATATTCGTGCCAACTTCTAACTGATGACTTCACAGAAGTGTTCATGATCAATGGAGAGAGTATGGAGTCAGTTCGCGAATCCTTAACAATGTGTAAAGATAAAGTCCTATCTAGTCTTCCATCTGAACGAACAAGTGCTGGGGACTCGACTGAACAAGTAGAGCTTGTTACGTTTAAGGATAACTATGTAGGAACTATTGCTGCTAATGCGAAAAAAAGCAACAGCGACTTTGGGCTGGTCATAACTGGAAAAAGTCTGGTTCATGCATTGAGTAAAAGTCTTGAGTTAGATTTCCTTGAGTTAGCATGCCTTTGCAAGGCAGTTATCTGTTGTCGAGTCACACCTCTTCAGAAAgccctggtagtgcagttGGTCAAAGACAATAAGAATGCCGTCACATTAGCAATAGGGGACGGAGCCAATGACGTCAGCATGATTAAAG

Transcript

alvinactis_v1_g4080

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00122	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan
PF13246	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan
PF16209	PhoLip_ATPase_N	Phospholipid-translocating ATPase N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006539	Family	P-type ATPase, subfamily IV	Interproscan
IPR008250	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR018303	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR023298	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR023299	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR032631	Domain	P-type ATPase, N-terminal	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR044492	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24092	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005802	Cellular Component	trans-Golgi network	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007030	Biological Process	Golgi organization	Interproscan
GO:0015914	Biological Process	phospholipid transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0045332	Biological Process	phospholipid translocation	Interproscan
GO:0140326	Molecular Function	ATPase-coupled intramembrane lipid transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-