Gene detail

Detailed information of alvinactis_v1_g408 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g408	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	chr_1	7503704	7518623	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g408

ATGATGTTACAAGCACTTTTCATTCTTGGTTGCATCACCGCAGCAGAGCCGGCTTCGTATTTCCAGTCCACCGACTGGTACAAAGCCATGGGATGGTGCTATCACAAAGGAAGCAGGCTGCTCACTGGTGATTTCAACGGGGATGGAAGAGCTGACATGTTGTGCCACGACAATAAGGGAAACAAATGGGTTGCCCTGGCCAACGCAGCCGCTCAGTTTACAGGCACCTCCTGGCACAAGGCCATGGGATGGTGTTATCACGCAGGCGCCGAACTGCACCTCGGTGACTTCAACGGCGACGGAAGAACCGACATGCTCTGTCACGACCGTGCAGGCTACAAATGGGTTTCCTTGGCAAATGCGGATGGCAGCTTTTCCGGTACTTCTTGGCACAAGGCCATGAAATGGTGCTCCCACGCGGGTTCTCGTCTCATGATTGGAGATTTCAACGGCGACGGTCGATCTGATCTGCTTTGCTACGACAAAAATCACAAATGGATATCTCTTGCTCAACCAGAGGGAAGCTTCGTGGGCACGTCATGGGACATGGCCACTGCTTGGTGTAGTCACGCTGGGTCATCCATCTACATTGCTGATTTCAATGGCGATTTGCGAGACGATCTTTTGTGTCACGACACCGTCGGCAGAAACTGGGTCATGCTGGCTATGGCCGGGGGGAAATTAACTGGGCGCTCTGACTGGCATTCATCCCAGAAGTGGTGCGGTGGAGCCGAGCTTCATCTGGGCTACCTCAATGGCGACAAACGTGCAGACATGCTGTGTCATCGTGAATCGGATGGATATAAGTGGGTGGCAACTGCAGGAGCACAAATTAAAAGTCTTTACTCGGGAACCAACTGGCATAAGGCAATGAACTGGTGCGGCACTACGGGAACACTTTTCCTTGCCGACTTCAACAACGACGGCAAAGAAGATCTTCTCTGTCACGAACAATCAACTGGCAAAAAATGGATTTCCTACAATCGCTATCCTTCTAAAGCTCCGTGCGCACCAAATCCATGCAGAAACAGTGGACAATGCATAGCCTCGCGCCGCCAGGCTGATGGTTATCGATGTCAGTGCAAAAATGGTTTTATAGGAAGGATGTGTGAAATAGacatcgacgagtgtaagaccagtccttgtaagaatggcggcatctgcagcaacacacgtggagggtacacttgtaagtgtgcttcaggcttcaaaggaaagcactgcgagcaagGCCCAGATTACTTCGGGTCCACCGACTGGTACAAAGCCATGGGATGGTGCACTCATAAGGGTAGCAGAGTGCTCACTGGTGATTTCAACGGGGATGGAAGAGCTGACATGTTGTGCCACGACAATAAGGGAAACAAATGGGTTGCCCTGGCCAACGCAGCCGCTCAGTTTACAGGCACCTCCTGGCACAAGGCCATGGGATGGTGTTATCACGCAGGCGCCGAACTGCACCTCGGTGACTTCAACGGCGACGGAAGAACCGACATGCTCTGTCACGACCGTGCAGGCTACAAATGGGTTTCCTTGGCAAATGCGGATGGCAGCTTTTCCGGTACTTCTTGGCACAAGGCCATGAAATGGTGCTCCCACGCGGGTTCTCGTCTCATGATTGGAGATTTCAACGGCGACGGTCGATCTGATCTGCTTTGCTACGACAAAAATCACAAATGGATATCTCTTGCTCAACCAGAGGGAAGCTTCGTGGGCACGTCATGGGACATGGCCACTGCTTGGTGTAGTCACGCTGGGTCATCCATCTACATTGCTGATTTCAATGGCGATTTGCGAGACGATCTTTTGTGTCACGACACCGTCGGCAGAAACTGGGTCATGCTGGCTATGGCCGGGGGGAAATTAACTGGGCGCTCTGACTGGCATTCATCCCAGAAGTGGTGCGGTGGAGCCGAGCTTCATCTGGGCTACCTCAATGGCGACAAACGTGCAGACATGCTGTGTCATCGTAAATCGGATGGATATAAGTGGGTGGCAACTGCAGGAGCACAAATTAAAAGTCTTTACTCGGGAACCAACTGGCATAAGGCAATGAACTGGTGCGGCACTACGGGAACACTTTTCCTTGCCGACTTCAACAACGACGGCAAAGAAGATCTTCTCTGTCACGAACAATCAACTGGCAAAAAATGGATTTCCTACAATCGCTATCCTTCTAAAGCTCCGTGCGCACCAAATCCATGCAGAAACAGTGGACAATGCATAGCCTCGCGCCGCCGGGCTGATGGTTATCGATGTCAGTGCAAAAATGGTTTTATGGGAAGGATGTGTGAAATCGacatcgacgagtgtaagaccagtccttgtaagaatggcggcatctgcagcaacacacgtggagggtacacttgtaagtgtgcttcaggcttcaaaggaaagcactgcgagcaagGCCCAGATTACTTCGGGTCCACCGACTGGTACAAAGCCATGGGATGGTGCACTCATAAGGGTAGCAGAGTGCTCACTGGTGATTTCAACGGGGATGGAAGAGCTGACATGTTGTGCCACGACAATAAGGGAAACAAATGGGTTGCCCTGGCCAACGCAGCCGCTCAGTTTACAGGCACCTCCTGGCACAAGGCCATGGGATGGTGTTATCACGCAGGCGCCGAACTGCACCTCGGTGACTTCAACGGCGACGGAAGAACCGACATGCTCTGTCACGACCGTGCAGGCTACAAATGGGTTTCCTTGGCAAATGCGGATGGCAGCTTTTCCGGTACTTCTTGGCACAAGGCCATGAAATGGTGCTCCCACGCGGGTTCTCGTCTCATGATTGGAGATTTCAACGGCGACGGTCGATCTGATCTGCTTTGCTACGACAAAAATCACAAATGGATATCTCTTGCTCAACCAGAGGGAAGCTTCGTGGGCACGTCATGGGACATGGCCACTGCTTGGTGTAGTCACGCTGGGTCATCCATCTACATTGCTGATTTCAATGGCGATTTGCGAGACGATCTTTTGTGTCACGACACCGTCGGCAGAAACTGGGTCATGCTGGCTATGGCCGGGGGGAAATTAACTGGGCGCTCTGACTGGCATTCATCCCAGAAGTGGTGCGGTGGAGCCGAGCTTCATCTGGGCTACCTCAATGGCGACAAACGTGCAGACATGCTGTGTCATCGTAAATCGGATGGATATAAGTGGGTGGCAACTGCAGGAGCACAAATTAAAAGTCTTTACTCGGGAACCAACTGGCATAAGGCAATGAACTGGTGCGGCACTACGGGAACACTTTTCCTTGCCGACTTCAACAACGACGGCAAAGAAGATCTTCTCTGTCACGAACAATCAACTGGCAAAAAATGGATTTCCTACAATCGCTATCCTTCTAAAGCTCCGTGTGCACCAAATCCATGCAGAAACAGTGGACAATGCATCGCCTCGCGCCGCCAGGCTGATGGTTATCGATGTCAGTGCAAAAATGGTTTTATGGGAAGGATGTGTGAAATCGTGGTCAATACATGTGTTTCTAAGCCATGCAAGAATGGAGGCTCTTGTGTTATCGTCGATGGGGGATACCGTTGCAAGTGTACTGCGGGTTATAGCGGCAAACATTGTACTACGGatatcgatgaatgtaaaaccagtccttgcaggaatggcggcgtctgcagcaacacaccaggagggtacacttgtaagtgtgcttcaggcttcaatggaaagcactgcgaaattgatatcgatgaatgtaaagccagtccttgcaggaatggcggcgtctgcagcaatacaccaggaggctacacttgtaagtgtgcttcaggcttcaatggaaagcactgcgaaattgATGTGAATGAATGTGCCGTCAACCCCTGTCAAAATGGTGGACTATGTATCAACGTACCTGGAAGTTACAAATGCAATTGTGTTGATGATTTCACAGGGCAACACTGTGAAACAGAGCCTTCATCTCCAAACAAAGTTACTTATGAGGAAATTGGTTGCTATAAAGACAACGGTGGAAATGAACGACCATTACCCATACTTGTCGTTAACCTAAGACCATCCATTGACTGGAACAACTTGAAACTCACTGTGGAACAATGTGCAGCATCTGTTAGGAAAGCAGGATACACGTACTTTGGTATTCAGTTCTACGGTGAATGTTGGAGTGGACCAGATGATCAAGTTGATTATGACAAACATGGAAAGGGTACCGAGTGTGTTGTTGGCGTTGGTGGCACTGGTGAAAACATGGTCTACAAGATTACGAGATAA

Transcript

alvinactis_v1_g408

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF13517	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013517	Repeat	FG-GAP repeat	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR028994	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12916	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-