Gene detail

Detailed information of alvinactis_v1_g3869 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g3869	SAM DOMAIN-CONTAINING PROTEIN-RELATED	chr_2	16735111	16749709	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g3869

atgactAAACATGGCATATTCAATCATGAAGCGAATCTTGCTAACTTAGGTGTGCCTATTATACCAATTGCTAATGTTGACATCCAAAAACGAATTGGTACTGGACCTTTATCAGGTGTAGCATGTTCAGCTATTTTAACAGAAAAGAATGGAGAAAAGGTTCGAGTTTGTTTAAGGTATCCACGAAATGAACAACAGTTATTTGGCTTCATCAATGAAGCGAAGACGCTATCAGCATTTTCTCATCCAAATATCCTAAAGCTTCACGGAGTGATAGCCCTTGGTCCTTATGTTGATTCTATAGCACTGGTGATGGAATTTGCACCAAATGGGAACATTGTCGAATCATTATGCCTGCTGACCGTTAAGAGTTTTTGCAGCATTCTACCCCAAATTTTAAATGTTCTTCAATATGTTGACAACAATGGATTTGTACACTGCCGGCTGAGTGAATTTGCAGTTTTTATCATGTCACCCACAATGATTAAAATTGGTGGTTTTGGTGGTTGTGTACCTAGAGATTCCTTGCCAAAAACAAAGAAAGACGACGAGGCTAAGCCACTGAAATTTTTATTAAATCCTTCAGTCAAAGGCAGAGATGAAATGATAAGTTGGTTCGCCTTCTTTGTTGAAAGAATTTTCTTTTTGTTAGAAAGAAGCCGTCCTCGAGAGGTCACATTTACGAAAACCAAAGCCCAAGTCCAAACTCGCTTCGATCATTTTTGTCCTGAAGTCTTGTTCCCTTTACTGAAACAATGTTCTCACAAGCCAGTTCCCAGCTATGAGAAGCTTTTTGATGTTCTACTTAGCAATGACTTTCCACCCATGGTACAAATGAACACAAGTTTTAAAGCTGAGCACCCTGGTGATATATCAATCAACAAAGATGAGATTGTTCTGGTTATATCCAAGTCTTTGATTAGCATACATCACAAGCCTTTAGATAATTTCTGGCTGGGAGAAAAAGAGGATGGACAAATTGGACTGTTTAATGGGAACTTGGCCACACCAATCAGTAACACAGAAGCTCTTTCTGATTCAGACGACAACGGAGAAAAGGACCATGAAGGCACCCAAATTCCTGTCGAAATAAAAGCACGTGGATCAAAAGCTGAACATGCCTATCGTAGGGCATTAAAGCACGGTAAAGTGGTCGTATATCGTGGTCGTATAATGCTTGTGGGACAAGAGAGAGCCGGCAAAACTAGTCTTAAAAATTCCCTTCTTGGGCTGCCGTTTAATCCCCAAGAGCAAAGTACAGTGGGTGTGGATGTTGACCCGTCTTGCTGTTGTATTGATGTTGATCACGTCAAGAACTGGCAGCGTACGGACCGTACTCACGTTGTGAGCGATTTTGCTGATAATATTGCAAGAATGATTGCTGATGATCTCAAGCAAGTAGAACAACGCGATGAGGTGAAAGACAAGAAACAAGACGATTTCAAGCAAGATGAGAAATCCATCTCTCAAGTACAGCAACAAGTGAAGGAAGAAAGTGATAATGACGGCAACATTGAAGATGAAGAAGGCGAACATGAAGCAGAAACTCCTAGTTTTTCAGAAACACAAGAAGGAAGTCAAGACAACTCTGGAGAAAGTAGTATGGCTACAGAACCTGATGTGGTACCAGAAGATGTGACAGAAAGAGTGATTCTATATTTACAGGGTTTGAATCTAGACGATTCCTCAACCAAAACACAAACGACGGTTAGCATATGGGATTTTGCTGGCCAGCACCTGTACTATGCATCACATCCAGTGTTCCTGTCTCCAAGGGCCGTGTACTTACTAGTCTATAATCTTAGTAAAGACTTGAATGTCGAAGCAGAGCCGTGTGTGAGACAAGACCCCAAGAAAATGGAAGTACTCATTAAAAAGAACCTATCAGGAAAGAGCTACCAACAGCATTTGGTAAAGCCATTCTACACTGTGAATAATACTGTATCATCAGCTGACGAAGGAATACAGCGTTTGCAAGAGAAAATCATCGAAGTATTTGGCATGGAACCTTATATGGGAGAGCATATTCCTGTTCGATGGCTTAACTTTGAGAAGGCGATTCAAGCCTTGGTAGAGAAGAAAACATATTATTTGCTGTTTGCTGATCTCGAGAAAATTGTCCATGAGATTTGCTTCATAGAAGAACGTGATGAAATCCGTGCTCTGTTGTTCTTTTATCACGATCTTGGTGTCATTATAAAACATGGCGATACAGTGGTACTACAGGCACAGTGGCTTATTGATCTCTTTAGAAAACTTATTACCGTTAGACCTTATGACGACCAGAATCCTATGTACGAGGAATGTTGGAACGACCTTGAGGAAAGTGGGATCCTACGCATGGAGCTTGTTGAACACGTGTTTAGTGAACTACTAGACAGTGGTCAAAGTAAGGAAGATCTGCTTGGTATGATGGAGCACTATGGACTCATCGCAGGCTTTAGGAAAGTCGCTGGAAGTGGTGATGTACGCTATTTTGTACCTGCCCAACTGCAATCGTCTCCAGAAGAGCTCCTCGACATTCAGCCATCACCAACAGGGCCATGTGCACTGTACGTGCATTTTGTCGATGGTTTTGTCCCACATGGGCTGTATTCCCTCGTAGTATCCAAATGTATTGCTTGGTGTTCTAAAGATGGTAGTCCACACGAACCCAATCTATATCGAAATGTTTCTCGCTTCATCATCGGCAAATCTTCGGATTACGAACTGATTCTAATTTGTTGTAAGCGCTTTATCAAAGTAATTCTGAACAGCCTTCAAGCCAACACATGTATTTATCAACCAGCAGTGCCTATCAGAAGATTTATCGAGTCCACACTGCAAGGGATATCTGACGAGTGCACATGGTATCGTTCATTGAGATATCAACTCACTGTGTTATGCCCATCGTGTAGTCAGTCGTCAAAACCGTGTGTAAAACACCGTGCAGTAGCATGTACTCATGATGATTGCATACACCTGTTAGCAATAACTGAACATCAAGTAATGGTTGTCGCAGGTTCGATACCTACAGACAAACTCATGTGTTTAGCTTGTGATATCGGTGACAAGTGGAAAGTTGTGGGGAGAGGTCTGGGGTTGAATGAATCTGAGTTGGACGAAATAGAGGTTGATGAGGACCAACTTTACGAACGATGCTATGCCGTCTTAAAACGATGGACCGAAATTTGTGGCTCGTCTGCAAACCATGAAGTTCTCAGTGCTGCATTGATGCACCCTGCGGTACAAATGACTGACTTGGCCTTGAAGTATTGTAGTTCAGTTAGACCGGACACACCAGATGGCCCACAGGTGGGTGCTCAGACCTTACCAGAGATTTTTCTCTCCTATCAATGGGATATTCAAAGTACTGCATTAGAGTTGGCGTCTGTTCTAAAGGACAATGGCTTTACCTGTTGGATTGATGTTGCTCAGATGGGAGGTGGAGACTCGTTGTATGCAGAAATGGATAACGGCATTAGAGCAGCTAAAGTCATTATTTCATGTGTGACAGACAGATATTGTAAATCAGAAAACTGCCAGCGTGAGGCAACACTAGCAGATACTATCAAGAAGCCAATCATACCACTCCTACTAGAACCAATTCCTTGGCCACCTGCAGGACAGCTTGGTCCGATTTTTGCCAAACTGTTATACATCGATATGACACAGGGATACCAAACTAAAATGGAGGAATTAGTCAAAAAGATCAAATCATACATGGCTAAATAA

Transcript

alvinactis_v1_g3869

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR000488	Domain	Death domain	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47508	SAM DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-