Gene detail

Detailed information of alvinactis_v1_g3422 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g3422	PENTRAXIN	chr_2	9749747	9757978	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g3422

ATGACTATATGTGTCTGTGTTATGATGGGTTTAATGGAACATACTGCCAACAACAGTTATACTCATGTGAAGACAAGCCCTGTGAAAACAATGGAACGTGTCAAGACATATTTGGTGGTTATACATGTAAATGCCCTGAAAGCGTTGGGTGATAACTTTGACCTGGTTTTCCAAACCAAAGCTAAAGACAACATGGTTGAACCAGTAGGAACTATCGTACCAGACATGAAGAGTTTTACCATAGCATTGTGGGTAAAACCAGATATCCGTTATCAACGAGGTACTATCATCACATACATGGTACCTGGGAACCCAAGTGAGCTGATGGAAATCTCATTCACTGATAGTTTCATTCGCGTTGTGGTCAAGACTGACCTACTGCAAAACTCAGCCAACATCACTGATGGAAAGTGGCATTTTATCGGTTTTACCTGGAACAGATATGGACATGAATTTTCTATTTATTTCGATGGGAAAATCATCGGAACTAATCGACTTGCGTCTGGTCCACCATTGAAAGGCGGTGGCAAGATTGTTCTTGGTCAGAAATATTCCTGGCAAACAAAGACTTACGTTGCGTCGGATTCTTTTGTTGGAATTCTGCATCAAGTTAACTTGTGGTACATGGCACAGGCAGACCAAGAATACATGTGGAACGCTGCACACAGCTGTTCGTGGCCAATAGAGGGAAACATTTATTCGTGGATCGCCTTTATGTCGGGTGTCAAAGGAAATGTCTTGAAAAAATTCCCTTCCACTTGCAAAGCTCTTGATCTCTGTAAAGACAACTGCTCTCATTACGTGGAATGCCATAAGAAAGGAGATGAGATTATTTGCAGCTGTCAAAAAGGCTTCACTGGTAAACTGTGTGATACCAACATCAACGACTGTATCTCAAATCCATGTATACATGGCCAATGTATGGACGACATTGCGTCTTATCAATGTGACTGTAATAAAGGTTACTATGGCAACAATTGCGAGAATAAACTTCAGGCTGATGCTGATCATAAAGAATGTCCAGCTCTTGGCAAACTACGTAATGGAAAGATCATGAAAGAGAGTTATGCAGGCAAGCATGTCGTTGACTTGAAAGTAAGTGATTTGATCGAAAGTGGAATGTCGAGATATGTGATTGACCCTGATGGTGAAGTGATTAACAATATTGCTGAAAAACTTCTGCAGAAAAATGAAGAGATACCGTTGCCTTTGCTAGATCGATGGACAAACAATCTTACAGAAATACCAGAGAAATTCTCTTACCTTGCTATTTATGAGTATTTAATCAAGAGACGAATTAAGGTCATTAGTAGCATGCACGAATCTGATGAAAACGCAAGTGTCAGTACAATCCCCCTTCCTACAGCTGAGAAACCTTTGAGAAAAGGGTATAACTTCTTTGCTTCTGGCCATGTTGATGATGTAAAGCTTAATCCATTAGAAAACATCACACATATCAGGGCAACAGTTCTTTCCTCTATGAAGGAAAGTAAATACAAAACCAACTTGGTCCTTGATAATACTTATGGTCTTGTCCTAACTGCCAAATGTGAGTGTGTTGCTGGAAAAGGTGGAAAATGCAACCATATTGCAGCCCTGCTGTTTTATTGCATTGATTTTCAGCATCACATGAAATCCCAATCCCCTTCTAAAACTGAAAAGTTACAGCAATGGCATCAGCCATCAAGGAAAGCCAAAAAAAATACCAAGGCAACAAGAACAGCAACTGAAGAGGAAGCTGCCACTGGAATACAATCAACTGAAAATCACAAAATCAGCTACACGCCTGAAGAGCTAGTTGTAAAGAAACTGCAGCACAGAGAATGGGCAACTTGCATAAGCCCTGATGGCATTGTTAGCATTCCAGAAAATGGGGAAAAAGGCTGCCTAGAAGTAAAATGCTTGTACAAGTCTCGTAACATGACACCAGAGCAAGCTGTCAAGGAATTTCAACAAAAAAGCACTTTCCCATTGAAGCTCATTAAAGATCAAGTAGTCGTGAAAGAAAAGCACACATATTATTACCAGATGCAGATGCAGATGGCTGTAACAACACTTCCATGGTGCGACTTTGTTATTTTTACAAACAAGGATTCCCCTGTGTTGGTAGAGAGGGTACATTTCAACAAGTCTTTCTGGGAGAGTACTAAAAAGAAATTACTTGAATTCCATCAAATCCACATTGTTCCTGCTCTGGTTTGTTTACAATTTAAaacaaaataa

Transcript

alvinactis_v1_g3422

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF09588	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001759	Family	Pentraxin-related	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR019080	Domain	YqaJ viral recombinase	Interproscan
IPR051360	Family	Neuronal Pentraxin and Related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19277	PENTRAXIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-