Gene detail

Detailed information of alvinactis_v1_g3369 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g3369	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	chr_2	9003744	9028775	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g3369

ATGCTTGTAAGCGCCCCTGTAAATAGTCTAGCTTGCAGTACTTCTACAGAAGCTTCATCTAGTGTCTCAAGTCCTTGTGTTGTCCCTACATCAGTCATAAAATGTATATCTGATCAGCTTGAGCCTGAGAAGAACCAAGGAACTGTAGATACATGTATGACTTTGAGTCTGAGACTACATGTACCAGCACTAAATGGACTGAATGCAGGACTTGTAGGACAGAACTCTATTTGTGTTGCTTCTACACCAAGTATAGCTAACATTAACCAGATGAAGCAGGGAGTGTTGTTAGGTCCCAAGGTTGCCAAGGAGGTTGGACCTTGCGGTTCACCTCAATCGACCTCAGCTGTTGAACCAAACAAGGGGACAAATGCACCTTTGATTGTTTTGTCGTCACTGAAGCCAGAGCCTGGTAGTACTCCATCAATTATAAATATAGCTGACATCCAGAACAATCTTGCAACTCACCTACTAAATAACAAACCATGTAGTTCTTCAACTGTGCTTGAAACACAACACAGCAAATATTTTTCAAAGTGTCCCATCAAGATTAAAGAGGAATCAGACAGCCATCCCAAATGTGGTCCAAACTGTGGTTGTGACGCTTGTTCTGCCAAATCATCATCGCTGACACCAGTAGCCAGCACATCCGGTATGCCTGGTCTGATTGATGGTCAAGGTATTCCAGGATGCAGTGGAATTGGTCAAAGTAGTACCGATAATAGTGATATTTCACTGCCGCCAGTCAATATTGGAACCTGTTTGTTGTGTGGAGATAAATTGTGTGGCAGTAATGGAGTAACGTGTGCCTCGGATGATGAATCGGAGGAACCAGAGGGTGAAAAAGACGATTTGCCTGCCCCTCCAATGTCTAGTGTAGAAGTGGACAAATTGTTTTCAAAGCTTATTGAGCAAGACAAAGAATCAGTAATTGAACCAGCTGCTGTCATCAATACTGACATGTTTCTACACCAAAAGCAAGCTTTGCAATGGATGATCACAAGAGAAAATAGCAATGATTTGGGTCCATTCTGGAAGGAAGTGTCCAGAGGGGATTGGTATAACGAAGGAACAAGATGCTACACTTCAGAGAAACCTAAATGTATTAAAGGTGGCATACTGGCAGATGATATGGGTCTAGGGAAGACATTGACTATTATTGCATTAATATTCACCAACCATATCAATGGCAAACCAATGTTCTTGAAAAAAGAAGTGACTTCAAACAAGAGAAATGCTTCATTAgatgcatctgagaacacaacagcaccacggtccaagaagacttgcataaatattagcagttcagatgatgcatctgagaacacaacagcaccacggtccaagaagacttgcataaatattagcagttcagatgatgcatctgagaacactacagcaccacggtccaagaagacttgcataaatattagcagttcagatgatgcatctgagaacactacagcaccacggtccaagaagacttgcataaatatcagtagttcagatgatgcatctgagaacactacagcaccacggtccaagaagacttgcataaatatcagcagttcagatgatgcatctgagaacactacagcaccacggcccaagaagacttgcataaatatcagtagttcagatgatgATGCCAAAGTTAAGATTGTAAAACCAGAAAAGATTAAAAAAGAAAAAGATGTAGTTGCAATCAAAAAACGAAAAGAGAGAATATTCAACAAGAAAAGAATTCAGGAAAGTAAAAAAGGCAAGGACGCTGGTGAGAAGTTTAGAAAACTCTTTCTCCCAAACTTCCTCAAAAAAAAAAACAAAGTTGAAATCAGTGTAAAGAAAGAAAAGTCTGGTCAATCTTCTCCAGTTCAAAAACCCATCAAAACCAACGACTCTGCTCCAAGCACTTCAAAGCTTGACAAAGATATCATGATGCTAGATGATGACAGTGATGACGAAGGTCTTAGTGTGGTAACTAAGCAACCAACAGCAGATCCAGGACcacccctcagaaccacacccctcagaaccacCAAGTTAGTCAGTACTAACCCTGCGTCCAACAATGTTGCCAAGGCAACACTGATCATTTGTCCACTATCGGTGCTTAGCAACTGGACAGACCAAATCTGCACCCATGTGAATCCTGCCGTCAGTCTCAGAGTGTACTTGTATTATGGATCTGAGCGTATCAAAGATATAGAATACCTCAAGAACCAAGACATAATCCTTACAACATACCCAACTATTGCTAATGACTTTAGCAGATCGCTGAATTCCCCACTGCATAAGATCAAATGGCTCCGTATCATACTGGATGAAGGCCACACGATCAGAAACAAGAGAACAACATTAGCTAAGTCTGTGCTGGAGTTGGTGGGGGAGAGACGATGGGTCGTTACTGGTACTCCTATACAGAACAGAATAGATGACCTGTGGGTTCTCCTATTGTTTTTAAGGCTTGAGCCTTTTAATGACAGGAAATGGTGGAAGACTATGATTGTCAATATTCGCCAGATGCGCGCGCGTAGACTAGCAGAGTTGGCAGACTTTCGGCTCAATACCTTAATCAAGCATATATCAATCAGACGACTCAAAGACGAGAAAGTCAACAACGCTAAACTAATAGAGTTACCACCCAAGCAAGTCGTGATTCAAGATATTGAGTTATCAGAAGATGGAAGGAAGCTCTATGACATGTTACAGCTTAAAGGACAAAATACTATTCGCAGGTACATTAGAGATGATTCTGTCCTAAAGCATTATGGTCACTGCTTTGCTATCATCATGAGGCTGCGTCAAATGTGTCTGTGTCCACGCCTTTGTAAAGCAGTTTTGGCCGACCTACGAGAAGCTTTAGATAAAACTCAAGAAGTAGAGGACACTGAAGACGATAATGAAGGCGACAACACAGCACAGTTGATCAAGGTTCTCATGGAAACCATTTCTGCTGGAGATAGTGAGGAATGTGCTGTGTGCTTGGAAGCGTTAACCGATCCAGTTATCACACCATGTGCACATGTCTTCTGTTCTGCATGTATCACCGACGTTTTGAACTCAGAGGGACTGGCACCAATGTGTCCTATGTGTAGGGGTCCTGTCAACGAGACCGACCTGGTACGAGTCCCTGAAGAACAGTTGAGGAACCAAAACAACAATGAGTCGAGTAGTACTGGAGACAACATAGACTGTCCTTTTGAGGGCAGTGCTAAGATTAAGGCCTTAATTAGCGCATTGGAAGCCATCCGAGATAAAGACCCTTCAATCAAAAGTGTGGTTGTGTCCCAGTTCACGTCATATCTGAATATTGTGGGCGAGTACCTCGACAAGCATGGGTTCCTTTTTCTGCGCCTTGATGGCAGTATGAACATCGATGCACGCATGAAAGCATTGGAGGATTTTAGCGAGACAGGTCCTGCTACAGTGTTCTTGTTGTCGATGAGTGCGGGAGGTACAGGATTGAGTTTGACTGCTGCATCAAGAGTATTTCTCATGGACCCGGCCTGGAACCCAGCCGTAGAGGAACAGTGCTTTGATCGTTGTCATCGTATGGGTCAAACTAAAGAGGTCATCGTCACCAAGTACATTGTGATGGACTCGATTGAAGAGCGCATGCTCACGCTACAGGAGCAAAAGCGTATGCTAATGACTGATGCCTTTGGTGCTAAGGCACAAAGTGAGGAGGATAGACGACGAACACGAGTGAGAGACATCGCTCATTTGATTGGCCTGCAGCCTGTTAGGCCAGCGATTCAGAATTCGAAAGAAAGCAAGCTAAAGCTAAGAAAACTTATCAGAGACATCGACCTAAACAAGGACGGGAAACTTTCCGCGGAGGAGCTGAAAGATTGGATCGAGAACCTTATTCACAAGTATGTTGCGAGTGAAGGTGAAAAACACATGCCTAAAATAGACCACGACGATGGTTATGCTACATGGGATGAATACAAGGAAGCTGCAGGGTATACTAAAGGTGATACACCCGAACCCCAAAAAAGCTCTGAAAAGAGCAAAATACGCGACAAAGAAAAGTTTGATTTGGCAGACACCAACAATGACGGCAAACTGTCTCACTACGAGCTCGGTATTATGATGCATCCCAACGAAGCAACTCAAATGTCGAAAGTTATTGTGAATGATTTCTTAGATACCATGGACAGGGACAATGATGGAAGGATTGCAGCCAAAGAATTTATGGGCGGAGATCTAGATGAAGGAACAATGTCAGAGTTAGATGAATCCTTCAAAAAAATTGATAAAGACGGTGACGGCCTGTTAGATAGCGATGAACTAAAAGAGTGGTTGGCTCCTGAAGACAAAAACGTTTTTCAGTTTGAGGTCGAGTCTTTGATAACAGATCTCGACATAGACAAGGATGGATTCCTGACCGAAAAAGAAATCTTCAAGCGCTACTCTCAGTTTGCCACCAGCAGAGCAACACTGTATGGGAGGATGTTGAAGCCAGACGACGACAAAGTAGACAAGAAGAAAAGTCTTGAGAAAGATGAAGTGAAAAAAGTTCTTGTAGTAGCTCTCGTAGCTCTTAGTGTAGACGCCAAAAAGAAGAAACCACCAGTATTCGTAGATGGAGGTGATGCATTTTCAGATCAACACCATTTTCAAGACGGACAACACGATCCCAAGTACGACCAAGATGCCTTTTTAGGCGAAGATCAAGCCAAATCGATGAGTGATTTAACTCCTAAACAGATAAAAGAGAAACTGAGAACCATTTTTACCAAAATTGACATCGACAACGACAAGAAAGTTTCGCGCAAGGAATTACTGGAATGGATCGTCGACAACATGAAGAAACACGTGTCTAAAAACACGAAAACGAGGATGACCGAGCTCGACAAGAACCATGACAACAAGGTTACATGGGATGAATATGTCAAGGAAGAGTACAAACATTCTGACGAAGGCGACGAAGCAGAGAAAAAGAGTCAAGCGGAGAACAAAGCACGCGAAGAGAAGAGATTCAAAATCGCAGATTCTGACGGCGATAATGCGCTGAATGCTGAAGAGTTAGCAATCTTCATCCATCCAGAGGAATCCGCCAGAATGACCAGTCTCCTTGTAGAGGAGAACATTGAGGCTCTAGACAAAGACGGCGATGGCTTGATTAACTTCGAAGAATATGCTGGACTCGGAGAACCGGGTGCAGCCGATGATAAGGAAACCATGGATTCACTAAAAGAGAACTTTAACAATGACTTGGACAAAAACAAAGATGGCAAACTTGATAGGGAAGAAGTGAAGGACTGGATCATACCTGGGGGTGACGCGGATCCCGCTACAGGAGAGACTGATCATTTGATGAGAGAGGCTGATATGAATAAGGACAACTATTTATCAATCAAAGAAATCTTGCATCACCACGAGATGTTCTCTGGAGGTCGAGTCACAGCTTACGGCGAACTCCTTAAGAACGACGAACTCTAG

Transcript

alvinactis_v1_g3369

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF13202	EF-hand_5	EF hand	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13920	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR050628	Family	SNF2/RAD54 Helicase and Transcription Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45626	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-