Gene detail

Detailed information of alvinactis_v1_g3182 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g3182	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29	chr_2	6193515	6212830	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g3182

ATGGCGGCTGCAAGAGTTTTCTCGAGAAAGTCAGTTCAAATCAGAGCAAGTTTTCACCAAGTCATTTTTCAAGGTACTTTTCGAGCATTTAGTACAAGGACTGTTGCTGCAGTTGACAAAAGAAGCTCTGCTGCAGACGTTGTCTCAGTTATCACTTCGGAAAATGACCCGAACAATCACTCCAATGTCGATCTTGGTTATTTTTACTCTGTAGCTGAGGATGAGATCAGCAGTAAACTTAACCACTGTTTACCCAAGCGATTCCTAAATCAGAAACGATTATTAGGCAATGATTACATCATGGTAAGAAAGCCAGCTGTTGATGTCATACAACAACTAAAACAATGGATACCTGACAAAACACAACCAAAGTTTGTTTTCTATGGTGAGGCAGGTTGTGGTAAAACCCTTTCTCTTGCTCATGTTGTTCATTCTGGGTACAAAGCAGGATGGTTTGTGCTGCTTGTTCCTAGTGTGTTTCACTGGGTGCATAGCAAGAAGGGAGTTCAGATATCAAAAAGCAGAGATAACAGGTTTGATCAGCCAGAGGAATCTGCCCAGTGGCTCAAAATGATCAGAGAAATCAATACAGATTTTCTTAGTAATATAGAAACCAGTCAGAATTATACCTGGGGTAAACTTGACTCTACTGAAAAAGGAAAACCCCTTCTGAGTGTTATTGATCAGGGTTTAAAAAGAATTAATTATGCTCCAGATGTTGTTGGTGTAGTGCTAAAAGAACTCAGGAAAGAGACCAGTTTAAAAGTGCTATTTGCAGTTGATGAATTTAATGGATTCTTTGGCCAGACCTCTTTCAAGGACCCTAAAGATCAATGGATCCAACCTAAAGACCTCAGCCTTGTACATCACTTCACAAAGCTGCTGCATCCCAACGATGGTTTGCAAAACTCTGCGATGGTATTCGCTTTATCTCGCACTGGAATCGAGCGAAACCACAACCAGTCTTACCAAATCAACGATCTTCTGGGACAGAATGGTGAATGTGCTCTTTCTCCCTTTACCAGCGTACACGTACCGGGATACTCTGCAAAGGAACTGGAGACGTGTCTAAGGTTTTATCAAGAGAAGGGCGGGTTTACTAAAGATACGGCTCTCAAAGATGCGACTTGGATCATTGGTGCGCCTGCTCGCCCTAGGCATCAGCTTCCCAATCGTGGCCAACTCATTGGTATCTTCTGTTTAACAGGTCCATCAGGTTTTAAACAAGGAAATCCTGAGTATCGACTCTTCAAGTATCTTTTCACGAATTACAGTAATTCTGTCCGGCCGGTCAGAAATGTATCGGACATTGTACCCGTCAGTTTTGATATCGGATACAGTTCAATCGTTAACCTGCATGAAAAAAAGCAGATTCTTATCAGCAATCTCTGGGTTCGACTGCAATGGTATGACCCTTGGCTGACGTGGAACGAAAGCGAATTTGCTGGCATGCAAAGATTAAATGTCGAACCCAGTTTGGTGTGGAAGCCTGATATTGTGCTCTATAACAATGTCCACTCCGACTCTAGCGGTGAGATGTACCTGTTCACGACCAAGGTCCTTTTATACTCGAGCGGTAAAGTCCGATGGTTGTCCCCCATACAAGTACAGAGTGAATGTAAGATCGACATCACCAACTTTCCATTGGACGATCAGCAATGTAAGCTAGAGTTTGGTTCGTGGGCGTATGACGGTCACCAACTCAACCTGACCAATGCACGACAAACTGCTGACCTGTCCATGTACACGACGAACGGCGAGTGGGAAATGTTGTCAGGGAAAGCAATGAGAAAGATCTCGTATTTCTCTTGCTGCAAAGCTCCATATCTCACGTTGGTGTACATGTTTCATCTCAGACGTCGAGCGTTGTTTTACTTCATGAATTTGATTCTGCCCTGCGTGCTGTTGACTTTCCTGTCAGCGATAACGTTCAGGTTCCCACCAGAATCAGGCGAGAGAGTCTCTCTGACGATAACCATCCTTCTCGGGATGACGGTGTTCATGCTGATCTTCATTGACAACATCCCACCTACGTCGTTGGTAGTGCCTCTGATTGGAAGATATTTCTCTTGTTCAGTTGTCATCATGGCGGCTACGCTTGTTGCAACCTGCGTGTCGTTATCGTTTTACTACAGCAAACCGTCAGATCAAATCCCAATCTGGTTACGTATTCTGACGTTCAAGTGCTTGGGCCCTGCTCTTAGTGTGCGCCCTCCGAAGCATCTAATGCCCGGAAATGACCTCAGGGTGCCAAAAGAAAGACGAAAGAGTAATAAAGGTTTATTCCTCAACGAAGCGAACGATAGACGACGCAGACTAAACCAGCATCAGAACAGCACCATCAGAAAGCTAGAAAACACATCCATGTTGAGCCAGAGTACGAGTTTCCCGAACAACCTAGACAAAGTACATCAGCCAGTCATACGAGTCTTCCTTGACTCCGAAGCTGCACGATTCCCTTCCGAACAACCACCGAAGAATCGTCCGTGCTGCTGTTGCTGCCGTGCTGGAGAGACGCCAGAAGAAGTCGAACTCGAAGAGAAGAGAGAAGAATGGCATTACGTTGCAGCTGTTGTTGATAGAGCTTTTTTCTATTTGTTTCTTATTATTATTTGTCTTTGTGCTTTGATTGTATTCTTTCTATCGCCGGCAGCAGGAATGTTTTTCTAA

Transcript

alvinactis_v1_g3182

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02931	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF02932	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF10236	DAP3	Mitochondrial ribosomal death-associated protein 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006029	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR006202	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR008092	Family	Small ribosomal subunit protein mS29, metazoan-type	Interproscan
IPR018000	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR019368	Family	Small ribosomal subunit protein mS29	Interproscan
IPR036719	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR036734	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR038050	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12810	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S29	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005230	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0005761	Cellular Component	mitochondrial ribosome	Interproscan
GO:0005763	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0006915	Biological Process	apoptotic process	Interproscan
GO:0015935	Cellular Component	small ribosomal subunit	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-