Gene detail

Detailed information of alvinactis_v1_g31651 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g31651	DUF3504 DOMAIN-CONTAINING PROTEIN	chr_17	16711523	16730101	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g31651

atgcactctctacgggtgcgtcttgcaggacgcacaggaagcacaacagacgatgttactcggcacagggagcctgacataatacTTACCGATGATGAGCTTTTTGAACTAAATCTAGATGAAGTAGGCATAGAGGCTACAGAAAACGACAAAACAAAGAAAGAAAAACAAATCGGAAGATTCGCTCAACTAACGGATGAGGTTGATGAGATCGTAAAAAAGAGGCAAAACACACAAAACAAAACACCAAATGGGCTCTTGGTGTATTTGAAGgagtatgccactatggctcatgataaggcctcaaaaaaccaccaaggcggcttcaatgacgaccaaaacaatgagaaacaagccagaatgtaTTCCGCCTCTGAAGATCCTTGCTTTGATGGATTCAACTGTTTGAAAAAATACATCAGTAAACTCAATCCTCAATGTACAGCACTATTTCAGTATCCCAAAAGATCCTTTACTTCTAAAGAGGGCGATGATGATGTATGGTACAAAAACCGACCACTGGCAGGATTATCCAGGATATACACTAACCATTCTGTCAGGGCCACCGCCATAACACTGTGGTCAAATGCTCACATACCAAACAGGCATATAATGGCAATTTCTGGTCATCGTAATGAGACGAGTTTACAAAGTTATAATAATCGCCCTTCAAGCGAACAGCTAAGGAATTGCTCCAACGTTCGTTCGCGTGCAGTTAATCTTGCAGAAGTCCAACGTATGCCAACCAGAGAAGGTCAGCTCGAGTCCATTGGTCAGACAatatcaggaaagatgtcgaagcctcatagtacacttgtagaatataatgttgtgttggattcgATTGAAGAAGCTGAAAATCTGAACGAGGCTTTTACCTTTCACAAACTCAGGTATTCAAATAATTTGAAAGTATTTTTCAAGATGGCGGCTGGTATTGAATGTCATGTTAGAAACGTATGCGAAGCCTTCGGGATTTCAGAGCTATTCCCTCAGCAAAAAGAAGCTCTTATCGAATTTGTAAATAGACGAGACGTATTTCTCAACCTGCCTACAGTGTTTGGGAAATCTCTGGTATTCCAAATGGCTCCTTATGTTCACGCCGAACTACCAAAATTTGGCCACGCAGGATACTCGTTAACACCAATAGTAGTGGTGATTTCTCCTCTGCTAAGCTTAATGGAAGACCAAAAGAGCTCATTGTATAAAccaaacaagtcccagccattaaatccagaggaagagtctacactgtggtcaaagggagagctaggagataccaatgccagtgttaagctgttaaccaacaccaacttcaagaacttgatagagcagctcggactaagacgacgccaggaacactatgatgcgtgtatcgaggactttcgccataggaaccatgaagatggcagtgaatctgtagaatttgaagaaaactctacgaaaacgagaagtggtggtctaaatattaaacatagaacatctaagcaaataatgtggagcgccgatggaggagagaaagatcctgtacggctcttcaaactctggttgtcaaaacgaccgtacggtatgaaacacaacggtcctctctatcttggcatcatacagcgcccaaagacttcagatgtttggtactccaaaatcagaatgggggagaacacgatcggaaaaatagttaagaccatggcagcttgcttgacaacggacaaaaagataacaaaccacagcatgagaaaaacattggtgtcaaaacttaagaaagctggtcgtccgcgccatataatcaaattaattacaagtcatgctcgtgaatcctcattagatgactacgatgaagttgacgaattccagcgaagagaatctcataccatcagtggatatcaagctccaaAATCCAGTACGAGTACTGAACAGCAAAGAATTCTCACAGAttattgtacattgtactcagtagctgcattctcattggtcgagagactacagataattctaactatcagtgcacgccagcgatatttcagcggtgtgatggttatctgtaggcagttatctgcaaaaacgaggcttcgtaggtcagcggattggttgttatctTTTACATCTAAGAAACCTACTCACCCCTCACTAGCTAAGAATCTCTCTGGTGTCGACCCATATACGCGGTTGCTTTGTCTCAATATTGAGATTGTAGGGAAGCAAGCAAACAGCGATATATGGGTCTTTAACAAAGATGTGCATATGGACTCTGATGGTAACTTAATACCAGAGGACAGACGCACACACATACTCATTGAAGAGGACTTTGCAAAACTGCCATACTTGTCTAATGTTTCTGGAGataacagctctgcattgaagacaactggtcagacaatcaatcctaagcacaaataa

Transcript

alvinactis_v1_g31651

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF12012	DUF3504	Domain of unknown function (DUF3504)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR021893	Domain	Domain of unknown function DUF3504	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR052787	Family	Mitochondrial antiviral-signaling domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21446	DUF3504 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-