Gene detail

Detailed information of alvinactis_v1_g3108 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g3108	LEUCINE RICH REPEAT KINASE 2	chr_2	5224149	5252575	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g3108

ATGAATGAAGGTTTGATAAAACAGCTTCAGCAAGCATGCATATCAGGCAACCTAAGTGAGCTTCGTGACATTACCTATTACAATCAGGATGAGACTCTAAAGATTATCCGTGGGGGAAACTCTCAAGAATCTGGAGTTTCCACAGATACTTCATTAGACTTGCTTCATATTGCATCAGCCAATGGATATGATGACGTTGTGCAGCAACTAATAAAATTTGGTGCCAAGGTGAATAAAATGTCTGAAGAACTTCTCACACCACTTTGTGAAGCGTGCATAAATGGACATATAGATGTTGTCAAACTTCTAGTGTCCAAAGGAGCTGAGATAGACAAGAACTTAGATAGACTCAATGAATCTCCAGTTGACCTTGCATGCCAGAATGGACATGTTAATGTTGTAGAATTTTTAATTAACCAAAAGCCTTCAATACTTCAAAAGAGTGGGCAATACTTACTCTACATTGCAGCCCTTGAAGGACACCTCGATATAGTGAAGCTTTTAGTCAAAAAGAGGATAAATATAAACCCTCCGCCAATTTGTGCTGAAGGTACCGATGACAGACCTGTAATGATTGATTTACATTCACCTTTATATGGTGCTTGTCTTGGTAAAAAGGAGGACATCGCAAAGTATTTAATTGAAAATGATGCATCAGTTTCTGTGAAAATTGTTGAAGAATTTGGGGATGAATTTCTTGGAGATGTCTTCAAAAGATTTACAAGAGATGTGAAAGCCAAGAGAAAGACAGCCATATCATTTGAACCTGACCCAGACATCAGCATGATTGCAGCACATTGGTCTTCAAAGAATATCTATTCTTTATATAAAGGCTGGTTTGTGAACTTATCTGTCACACTTAGTTGTGTTGATTTATCTAACAACTATCTTCAAGAACTTCCAGATGAGTTGTTCAACAGCCTTTGTGTCTTGGAAGAGCTTGATGTATCCAACAATAAGCTGATTTGTCTGCCAGATCTTAACTTTGCTGAATGCCATACAAGTTTGGAAAAGCTTTTTCTCCACAAAAACCAGCTAACCTATATACCAAGCTCACTCTTCCGAATAAAAACGCTAAAGAAGGTCAACCTTTCTTACAATATGATAAGCACACTTGACGATGAGGAAAGTTTGGACATGGGTGAAACGTGGAGATGTCCTTCTCTGAAAGTGTTGAAGCTGAACCATAATTTACTCACATCATTGCCACGTGGAATGCAAAGTGCTTCAGGACTGACCAAGTTATTTGTCAATAATAACAAGCTAAAAGACTTTCCAATGCCCTGGAAATGTCCTCTGGAAAGTCTTGATCTTTCATTCAACCGCTTGACAGAATTTTCAGCCAATGTTGATATGGTTTGGTCAGAATCTCTCAGATATTTAAATCTGTCTCACAACAGCCTGAAGTTAATTTCGTGGAGTGTTTGTCAACTGTCCTGTCTGTTTGATCTTGATGTGAGCCATAACCGCATTAAATGTTTGCCATCGGAAAGTTCTTGGAAGTGCTGCAATCTGCATAAACTTAATTTATCTCACAATAAGATCAGTTTCAAAACCTCAAGTGAAGGTCAGGCCAATACACTACAAAAGTTGTTCAAGACTCCAAGTCAAGATGATAATCAAGACATCAAGAAAGATAACGAGCTGCCAGTGGCTCTTTTTGCTCCAACACTAGAGACTTTATTTTTGAATGAGAACTGCCTTCAAGAAGTCCCTCTGTCAGTTTGTCAGCTGTCAAATCTAATTGAGCTGGATCTCAGCAACAATCCTGAACTTAGAGCTCTTCCTCCACAACTTGGTAATCTGAGAGATTGCTGGCAACTAAGGCTTAGTAATCTTAACCTAACCAGACTACCAAAGCATGTAAGACCAGGCACAATGGGTGTGCGGCCTAAAGACACCCTGGCATATTTACGAGCAACACTACGCAAGTCTGTGCCATATTACAGGATGAAACTAATGGTTGTTGGCATACAGGGACATGGCAAGACGACCCTACTTGCAGCACTCAAAGGAGAAAATCTCCCTAAGAACCTATCAACAGTAGGGATTGTGATTGACGAGTGGAATGTACAGCCAAATTCTAGTTCCTGGTTTTCCTGGCAAAGATTAACGTCCCAATCCAGTGATACACCAACCATTACCTTCAGCACTTGGGACCTCGCTGGACAGAGTGTCTACTATGCAGCACACCAAATGTTTCTGTCTTCCAGTACTCTGTACCTTTGTGTATGGAATGTCACACTTGGCGAGGAAGGAATTGAAAATCTTCGACAGTGGCTTCTGAACATCAAAGCGCGGGCACCATTCTCTGACGTGCTTATTGTGGGGACCCATGTGGATAGGTTACCAAAGAAGGTCCACGATTCGCGACTCGATAAACTCAAACAAATGGTAATGAACAAGTTTGCAGACAGCAAAGGCTTTCCAAAGATCGTGGGCAATATTACAGTGTCTGCAACAACGGGAGAAAATATCGTAGAACTGAGAGAGATGATTTATACCAAGGCAACCAGAACTAAAGAACAAGGGGAACATGTTATTGGAAAACAGGTCCCTCTGAGTTACATCCAGTTGCAAGAATCAGTGCTCAAGGAATCTCAGAGGAGAAGAGAAGCGGGACAACCGCCGATATTACTAGAAGAGGAAATCCTTGATTTGGCAAGCAAGAACAAAGACAATGATATCTTAGATCACGAGGAGTTAGCTTtagCTACTCGATTTCTACACGAGAATGGCGTTCTTCTCCACTATAATGACCAGCTAAGAGGACTGAACAACTTGTACTTTATCGATCCATCTTGGGTCTGTGACTTGATTGCTAGTATTGTGACTGTCAAGGAACGCAACAACTTTGTTAAGGAAGGGATCATGTTGAAGAGTAATATTCACTTTGTACTGAAAGATCCTCGTTTTCCTCCCGAGTACATTCCACAGTATTTGCAACTTATGGAACGATTTGAAATTGCGCTCTCCCTTGATGAGGACAGGCTTCTTATTCCATCCATGCTACCACTTGACCCCCCCGGAATGCAACGCGATGTGATACATAGACGGGGGAGTGTACAACGACCCGGTTGGCACTCCAGCAACCGTTCGGAAACGTTTACCCCATCAAGTTCGCATAGTAGTAACCTTCCCACGGAGAAATATTCTTCGACGCTACCAAGATTGGTGCCCAAGGAGCAACGAGAGAATACCAACGAAAGCGATGAAGATGACGGGTGTCCAAAGGAACCAATCGACGCTGTGTGTCGTAATTATCAAATGGCGTACATCCCGAGTGGTTTTTGGAGTCGTCTTATTACCAGGCTGATGGTGTCGTCACACAGATGGCGGACGAACGAGGGCATTGACGAAAAGTCATTCTTTATGATGTACTGGAGGAAGGGAATCAGTGTAGTGTATGAAGGAGGACACTTTTTGGTTCAGTCCTACAAAGAATTGGTTCCTCTACACGCTGCTCGTCGCCGTTTTGAAGAGTTCGAAGGAGTCTCTATTGAGGCGTGGTCGTCATTCAGGGATTTCTCCGTCTTGGGTTTCATCGTCGACCAGGTGGATGCCCTCATCTCTGAATGGTATCCAGGTCTTGATGACACAGACACATTTGGCTATCCCCTCGTTCGTCGTTTAATTCCCTGTCCACGGTGCTCAAGCTTCCTGGCGCGTCGTGGTTCCTTGCTGCGTCGTTCATGTTCCCTGGAGTATCCCACAGAGCAGCATTGCGGTCTACAACCAGTTCGTCCATACAACTTTACACTACCAACATGTGCTGCTGCAGCAATGAGCTTCTCGACCATCAACTGTCCTTATCACCCTGATACAGTTGTGTCGTTAGATGAGCTTATCCCAGATCTTCTCATGACTGACCTCCCCCGGAATTTACTGGTCGACAGTAGCGAGTTTTCTTTTAAACAGGATGATGTAAGTCGGTTGGGAGGGGGAGGAGCAGGTGAAGTTTACAGAGGGCTTCTTAGAGATACAGAGGTTGCAGTGAAGACTTTTCATTCCACGCGTGTCACAAGATATTGCCAGGACAGTGGTTTCGGAAGAGGAACCGACTCGTGTAGCACATTGTCAAATGCAGGATCATCGTTTCGACACAATAGAAGTGAGGGCTCGAGTATTCGCCGAGCGGGAAGTCTCCGTGGGGAATTTATGTTTGGAGAAGATGATGTTGAAGATGAGTTGGAGAAGACTAAAGTTGTGCGCGCATTTTGGGATTTGCGACAAGAGGTTGCTGTTCTGTGCCATCTTCGACACCCATGCATTGTAAAACTCCTGGGTGTCTCTCTCCACCCATTGTGTTTTCTACTAGAACTAGCCCCCCATGGTAGCCTGGCCAACCTCCTAGACGATCTGACTTCGGGAAGAGAATCCAAAAAGAACGAAGTGTTGAACCCTGTCCATTACGAGAGTAAAGACAGTGTGTTAGGAAAGTGTTTGACATACAGAGTTGCATATCAGGTTGCAAGTGCCTTGTGGTATCTTCATGATTCAGACGTCATCTACCGTGACCTCAAGGCTGATAATATTTTAGTCTGGTCGTTAGACGACACTGACTTGGTTAATATTAAGCTATCTGATTACGGAATCTCTTGTTTCACTACTCCGCAAGGCGTGGCCGGCGATGAAGGCACACCTGGTTACCAGGCTCCTGAAATACGCACGGGCGTTGGCTACGACGAAAAGGTCGACATCTTCTCGTTCGCCATTTTTCTGTACGAGTTAATATCTGGTGTCCGACCATTCCACGACCTCAAAAGCGCTGTGGAGATCAAGAAAGCCATTCGCAGAAACGTCCGTCCATGTCTTGAAGACCATGACGTAGACAGTCAACTCCCACGACTTGAACAAATGATGAGAACGTCGTGGCATGAACTCCCAGAACGACGACCAACGTCTGAGAAAATCCTCCGCAATATGCAAGAACCAGAATTCTTGTGCCATTGTCGTATAATGCCGTCACCCGAGGAAGGCTTCCTGGAAAAAATCACTGCAGTGTATGGAATGGCGCACTCTGGAGCAGGAAGCGCAGAGTCATCGAGATCATCTAGTTTTGTTCTGCTATGGAGTCGTGAGCGCAGCCGTCGTGAGTATAGCCTGCTAAACTGTGACACTGGGGTGTTTTACCTTAAAGAAGAGTCGTGTCCTGGACACAGAGTGCTTTGTATGGCTAAAGTTGGCAGTAAAACATGGTTGGGTACTGAGGGGAATACCATCGATGTATTTGGCAGGCGTTCCATACACCGTCTTCCTAGCACCCTTTTTTCTTTCCTTGTCAAGGCGGCAGTATTAGGGTTACTGATCCAGGAGTCTAGAGAACCGTCATCTAACGAGACCAAGATTGACCGAGTATATGCATCGTTATCCAACGGAACAATAATCATATTTACCCACCAGAGTGATTCTTCACCCAGTCGCATTGTCGACGACGTCAAATTTAGCCTAAGTGACGACGATGGTGTCATCAAGGACGAAATGTCTCACTGGAATGATATCCAGGTCATTAATCTTGGTCAGAGCGGCAACCCCGTCAAGTGTATGGTATTGACCAGGAATGACACAGAGCTTTGGGTGGGCTGTGGTAATAAGATAATAGTTTTGGATACACAGACATCGATGATTACCAAAGAAATTCAAGTGTACTCGTCGTGGCGAGCGCACATCCGGAAAATGGTTGCTTGTGACGATCGTGTTTGGAGTATTGATCGTCGGTCGACGAAAATCCTTCAGTGGGACGTCCACACCCATCAACTCACATACGTCTTTGATCTGGAGGCGAATGAACCAGTCATGAAACTGGTGTGCTCTCCCTTCTCCAAGGCAGAAGAGGTTGACATTGGGGAGGAGGAAGCCAAAAGACAAGGAGACACCCTCCCGAAATGGGGTCGAGGTAAGACCGATACTAGAGACGTTCAGATTCCACCATCCTACGACGCGTCCACGTCATCCGGCCGCTCCTTGGATAAGAAACTTGTACGCTCTGGAGCCATGAAGATTCGGGGTCCTCCTGGCGTTGCTGGCAGTGACGAAGGACCTTACACAAGTGGTGGTGCCAATAGCTCTACAGCAGTAGACCCGACCACGCCCACCAAGGCAGATCAGACGGCAGAAACCACAGATGAAGTCGCAGATACCAGCGAAGAGAAAGCCCCTCCACAAGACGATATCGCAGAAGTAGGATTACTCGGAAGCTCAGTTGATAGTGGTTTCAGCGCAGAATCTTCAATAAAGAGTACGGCTGACGTTCAGTCAAATATCCAGAACTCTGAAACGGTGGTCCCTGAAACTGGTGATAAACTACCAACAGAGGAATGTACAGATACAGGTAACAACAACGAAGAATCGTCTTTCGAGGTTGTAAACCGCTCTAAAATCGTCGTCGAGGCTGCCATAGAGCGAAAACAGAGCATAACACGCCGGAATGTCGAAACGGTTTCCATGGCGTCGCTTAAGTTGAAACCAAAGTCAATGTCGCGAGGACCGTCTTTGATGAGGGCAAGGAAGAGAAAATCACTTCGTAACGCCAATCAAGTGTCACCAAAGCCACAGAGCGATGCGACAAGACCGCGACTCCACGTGATGTCTGGATCGATTAATAAAGTCATGGCGGTACTCTACGAAGGGGGGACACTGTGGGTCGGACGGGGGAAGGGAGATATCATTGTCATTAACGTTGACCCAGATGCCGAAGCCTACTTGTATGGTGAAGTAATAGCGCAAATGAAATGCAACAGTCTCCTCGTCAATTATGCTGAAGGACAAGTTGACGAAGTCATCAAGTCAGGCAATAATAAGATCGTTTGCCTTCGCCGCTTGGATCCAGTGCGTATGCGCAGACAAGCCTCGGACAATCTTCCCCAGTCCCCCAAATCGCCCAAGTCTGCACGGAGCCCAGAAATGGAAGACCGCTCGACCGAGCGATACCAGCTGATCATTTGGGAGGCCTGGGGACGAAGGGAagacagctatggtaatggtaaagatgatgaagatgatgtgatacttcggatgacgatgaacaagatgatggtgttgatagagatgacgatgatgacagcattaatggtttcagagacagttatggtaatgatgaagatgatagacagttatggtaatgatgaagatgatgtgatacttcggatgatgatgaacaagatggtgataatgatggtgttgatagagatgatgacagcattaatggtttcagagacagttatggaggatgaagaggaaaaggacaaggaggaagaagatgatgaagaaaatgaggagaaggaggatgaagaggaaaatgaggagaaggaggatgaagaggaaaaggacaaggaggaAAATGAGAAGGATATGTATCCCATATGA

Transcript

alvinactis_v1_g3108

Protein

alvinactis_v1_g3108

MNEGLIKQLQQACISGNLSELRDITYYNQDETLKIIRGGNSQESGVSTDTSLDLLHIASANGYDDVVQQLIKFGAKVNKMSEELLTPLCEACINGHIDVVKLLVSKGAEIDKNLDRLNESPVDLACQNGHVNVVEFLINQKPSILQKSGQYLLYIAALEGHLDIVKLLVKKRININPPPICAEGTDDRPVMIDLHSPLYGACLGKKEDIAKYLIENDASVSVKIVEEFGDEFLGDVFKRFTRDVKAKRKTAISFEPDPDISMIAAHWSSKNIYSLYKGWFVNLSVTLSCVDLSNNYLQELPDELFNSLCVLEELDVSNNKLICLPDLNFAECHTSLEKLFLHKNQLTYIPSSLFRIKTLKKVNLSYNMISTLDDEESLDMGETWRCPSLKVLKLNHNLLTSLPRGMQSASGLTKLFVNNNKLKDFPMPWKCPLESLDLSFNRLTEFSANVDMVWSESLRYLNLSHNSLKLISWSVCQLSCLFDLDVSHNRIKCLPSESSWKCCNLHKLNLSHNKISFKTSSEGQANTLQKLFKTPSQDDNQDIKKDNELPVALFAPTLETLFLNENCLQEVPLSVCQLSNLIELDLSNNPELRALPPQLGNLRDCWQLRLSNLNLTRLPKHVRPGTMGVRPKDTLAYLRATLRKSVPYYRMKLMVVGIQGHGKTTLLAALKGENLPKNLSTVGIVIDEWNVQPNSSSWFSWQRLTSQSSDTPTITFSTWDLAGQSVYYAAHQMFLSSSTLYLCVWNVTLGEEGIENLRQWLLNIKARAPFSDVLIVGTHVDRLPKKVHDSRLDKLKQMVMNKFADSKGFPKIVGNITVSATTGENIVELREMIYTKATRTKEQGEHVIGKQVPLSYIQLQESVLKESQRRREAGQPPILLEEEILDLASKNKDNDILDHEELALATRFLHENGVLLHYNDQLRGLNNLYFIDPSWVCDLIASIVTVKERNNFVKEGIMLKSNIHFVLKDPRFPPEYIPQYLQLMERFEIALSLDEDRLLIPSMLPLDPPGMQRDVIHRRGSVQRPGWHSSNRSETFTPSSSHSSNLPTEKYSSTLPRLVPKEQRENTNESDEDDGCPKEPIDAVCRNYQMAYIPSGFWSRLITRLMVSSHRWRTNEGIDEKSFFMMYWRKGISVVYEGGHFLVQSYKELVPLHAARRRFEEFEGVSIEAWSSFRDFSVLGFIVDQVDALISEWYPGLDDTDTFGYPLVRRLIPCPRCSSFLARRGSLLRRSCSLEYPTEQHCGLQPVRPYNFTLPTCAAAAMSFSTINCPYHPDTVVSLDELIPDLLMTDLPRNLLVDSSEFSFKQDDVSRLGGGGAGEVYRGLLRDTEVAVKTFHSTRVTRYCQDSGFGRGTDSCSTLSNAGSSFRHNRSEGSSIRRAGSLRGEFMFGEDDVEDELEKTKVVRAFWDLRQEVAVLCHLRHPCIVKLLGVSLHPLCFLLELAPHGSLANLLDDLTSGRESKKNEVLNPVHYESKDSVLGKCLTYRVAYQVASALWYLHDSDVIYRDLKADNILVWSLDDTDLVNIKLSDYGISCFTTPQGVAGDEGTPGYQAPEIRTGVGYDEKVDIFSFAIFLYELISGVRPFHDLKSAVEIKKAIRRNVRPCLEDHDVDSQLPRLEQMMRTSWHELPERRPTSEKILRNMQEPEFLCHCRIMPSPEEGFLEKITAVYGMAHSGAGSAESSRSSSFVLLWSRERSRREYSLLNCDTGVFYLKEESCPGHRVLCMAKVGSKTWLGTEGNTIDVFGRRSIHRLPSTLFSFLVKAAVLGLLIQESREPSSNETKIDRVYASLSNGTIIIFTHQSDSSPSRIVDDVKFSLSDDDGVIKDEMSHWNDIQVINLGQSGNPVKCMVLTRNDTELWVGCGNKIIVLDTQTSMITKEIQVYSSWRAHIRKMVACDDRVWSIDRRSTKILQWDVHTHQLTYVFDLEANEPVMKLVCSPFSKAEEVDIGEEEAKRQGDTLPKWGRGKTDTRDVQIPPSYDASTSSGRSLDKKLVRSGAMKIRGPPGVAGSDEGPYTSGGANSSTAVDPTTPTKADQTAETTDEVADTSEEKAPPQDDIAEVGLLGSSVDSGFSAESSIKSTADVQSNIQNSETVVPETGDKLPTEECTDTGNNNEESSFEVVNRSKIVVEAAIERKQSITRRNVETVSMASLKLKPKSMSRGPSLMRARKRKSLRNANQVSPKPQSDATRPRLHVMSGSINKVMAVLYEGGTLWVGRGKGDIIVINVDPDAEAYLYGEVIAQMKCNSLLVNYAEGQVDEVIKSGNNKIVCLRRLDPVRMRRQASDNLPQSPKSPKSARSPEMEDRSTERYQLIIWEAWGRREDSYGNGKDDEDDVILRMTMNKMMVLIEMTMMTALMVSETVMVMMKMIDSYGNDEDDVILRMMMNKMVIMMVLIEMMTALMVSETVMEDEEEKDKEEEDDEENEEKEDEEENEEKEDEEEKDKEENEKDMYPI*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR051420	Family	Ser/Thr Protein Kinases with Diverse Regulatory Roles	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48005	LEUCINE RICH REPEAT KINASE 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-