Gene detail

Detailed information of alvinactis_v1_g31047 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g31047	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	chr_17	6913447	6926342	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g31047

ATGAAATGGGTTTTGTTTTTCACAACATTTTTGCTCATTGTTTTTGCCGAGTTTCTTATCATCTCAGCACAAGAACACATTGACGTCGACTCCTACCCTGAAATCACATACTTCCCACCAACTGACTTGGTAAGCGCTGGTGACATTAACGAGGGAACTGATGTCAATCTACCATGCAAAGCCAAAGGAAAACAACCCCTAACCTATAGATGGCGTTTCTCCAAGGGAACTTCAAGCAAGCATTTCAAAATGGACGACGATGGCTCACTCATCGGTCGTAACCTAAAACCACAACGTGCCAAACAATTACTTCAATGTGTTGTTAGCAATGAGTATGGCACGGTGTTTAGTACTTTAAGGGAAATCGATGTAACAGCTGTAACCACTCCATTCAAAGCTGGACCATCATCACGACCATCTAAGCTGTTCTTTTCCTATGGCCATCCACTGATAGTCCCTAGCCCACCACATGAAGTACACCTTGGTGCGAACTATACTTGGGGGACAGTTGATAAACTAGATGGGCGTTTTCTTCCTCTAAAAGAATCCAAGCATCATGGAATAACAGCTCGTGGATCGCTTGTGTTCAGTTTTATCAAGATTTCAGACATTAGAAAAACactgcattgtagagtgtctgtaggtctaatgcattatgtatcacgtggatatgggttttctgcaggaaggtcaaTAACTCGGTATGGTAGTCATTTCGCACTTCCACCAGCGCTAGTAGAAAAGCCACAAGTCTATGAAATGGCGTCGAGAGGAACCACCAAGATAATGCGATGTGTTCCTACTGGAAATCCTACGCCTGATATTATTTGGTGGAAAGATGGAGCTCTAATCTACAGTGGGAAGAACGACATGAAACTCGAATCCTACAACAGAATTCTAGTGATTAAAAACATCAACGAAAAAACTCATCCAGGAAAATATCAATGTGGTTATGGTAGTCATGTATCAACCAGACGAGTacttgctactaccactctacatgttacagGTCCTCCAGTAGTAACGAAACGTCTACCAAAAGCACTAACAGTAGAAGCAAAGCACAACTTTACACTTCAATGTAAAGCAAAACAAATGTTCTCAGCCTATCAAGATGATTTGCATTATCATTGGTACAAAGACGAAAAAAGAATTGAAAGTGCCAGAAATAGAACAGTTGAGAAAAACACTTTGACAATTATGAACACACGTTCAGAGGACAGCGGTGTCTACCAGTGTGTAGCTTACGATCGTCAAGGGATGACTACAGCATCAACTCGTGTGCATGTTAACGTGAAGAAGTGTCCGGCCATTCCACCACCTCTACATTCCAAGTTTACTGAAGGTTCTTGCCAGGTGCATTCAGCGTTTCTCTCTGGTAGTAGATGTACTGTGTTGTGTGATAGAGGATTCTTTGGAAAAGGACGCAGAAATTATCGTAAATGTATGGAGGACGGGGGGTGGTCTGTTATGCAGTACATATGTGAAGATAACGTACCACCTAATATCAGAGTAGGATACGGTTGTCCAAACAATATTATCATGGCAACACAAATAAACAACAACACTGGAACCCAGGTCACATGGAAACCACCAGCGGCCGAGGACAACAGTGAAAAGTTGGTGACAATAATTGAACCGCAAGGAATCAAGGGAAATACTCATTGGTTTTCAGTGGGAGATAATTTAGTCAAGTACACGTTTATTGATCCCAGTGGTAACGATGTGTCGTGTCAGTTCACTGTCATTGTTTTTACTCGAACACAGATCGTCAGCAAGCCACCAAGTCTGATCTACGCTTTAAGGGGTCAAACATTGAGCCTTGGATGTATCGCTAAATCATACCCAATCAAACCCCTCTACACCTGGAAGAAAAGCACATATACCGACAACGACCACAGCATTGTCATTAAGACTTCCTCTAACATACAGTTATTGAATGGCGGTGAAAAACTGGTGATAAGTCACGTGAGTGATAAAGACAGTGGTAAATACGTATGTGAAGCGGTCAATACCTATTATAATGCCCCTGGTATACGAGATACTGCAGTGGTATCCGTCGAAGTAGTCAAAGAAGTGCAGTGGTCTCCATGGCAACCTTGGACAACATGTGACGTCAGGAAATGCGGCAATGGATTACAAACTCGTAAGAGGACTTGCCTCAAAAAGTACACTCAACGACTGGCAATAGGATGTACAGGGGTAGACAAACAGAGTAGAGCCTGTGAAGTGATATGCCCTTCCTCTCGAACCTCAATCAACAGGGATTTCCTTGGGAAGGCAGATATCATCAAACACGTGGCCATCAAATATGAAGAACAGGCACGTGGCTGGCTTAATGTACACTTGCCTTGGCTTCATAGTTGGCTAGATACTAGTGGTGGTAGGATTGGCTTTGCCTTCTTATTGATTGGGCTTGGTATAGTGATTGTACTCGTAAGCTGGATTTGTGGCCGTATTTTCTTCTCTCGAAAAAAGAGAGTTCATTTTGCGGATGCAGATACAGTACCTTCAAAAGAAAACGACGATAAAGTAAAACAAGAAGAATCGAGTAAAGAGTCATCTCCCACATACGAGAATGTTCCCGCATCTACCCCGGTTTATGAGAACACGCAGACCATGCCCATTTATGAAAATACCCCATTGGAAGGTCAGAATACCCCACATTACGAGAACACAGGTACAGAAGTTCATTACGAGAATGTTGGTTATTTTGATGGACAATACGAAAACACAGATAACCAGTATGACCAGGGCGGATATAACTACGAAGACCATGACTTGGTATACGAAGACATGGCGgttgcaggaactctggccgtccaacgtgaacgttaa

Transcript

alvinactis_v1_g31047

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF02494	HYR	HYR domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR003410	Domain	HYR domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-